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Protein Overview: gi|24347481, gi|...

General Information:
Name(s) found: gi|24373247 [NCBI NR]
gi|24347481 [NCBI NR]
Description(s) found:
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  • gi|24373247|ref|NP_717290.1| acyl-CoA dehydrogenase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347481|gb|AAN54734.1|AE015614_1 acyl-CoA dehydrogenase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • acyl-CoA dehydrogenase family protein [Shewanella oneidensis MR-1]gi|24347481|gb|AAN54734.1| acyl-CoA dehydrogenase family protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • acyl-CoA dehydrogenase family protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 385 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: fatty acid catabolic process [ISSLink to PubMed article]
    Molecular Function: acyl-CoA dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFNFNEDQR QFAELARQFA TDELAPFAAK WDEEHHFPKD VIQKAGELGF CSLYSPESEG  60
   61 GMGLSRLDAS IIFEELSKGC TATTAMLTIH NMATWMVTTW GTETLRQAWS EPLTTGQMLA 120
  121 SYCLTEPGAG SDAASLQTKA VPDGDEYVVS GSKMFISGAG STELLVVMCR TGQAGPKGIS 180
  181 AIAIPADSEG IIYGKAEDKM GWNAQPTRLV TFDNVRVPVA NLLGEEGQGF TFAMKGLDGG 240
  241 RINIATCSVG TAQAALERAS QYMNERQQFG KPLAAFQALQ FKLADMATEL VAARQMVRLA 300
  301 AFKLDSGDPE GTAYCAMAKR FATDVGFQVC DAALQIHGGY GYIREYPLER HFRDVRVHQI 360
  361 LEGTNEIMRL IIARRLLDEN AGQIL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..385] PSI-BLAST 108.0 Crystal structure of isobutyryl-CoA dehydrogenase complexed with substrate/ligand.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • acyl-CoA oxidase activity
    		•  7.85164875699474 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  7.69964776555327 bayes_pls_golite062009
  • acyl-CoA dehydrogenase activity
    		•  6.0252876667118 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  5.78129971677842 bayes_pls_golite062009
  • isovaleryl-CoA dehydrogenase activity
    		•  4.66102768687662 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  4.57415724042946 bayes_pls_golite062009
  • oxidoreductase activity
    		•  3.99827953439804 bayes_pls_golite062009
  • RNA polymerase II transcription mediator activity
    		•  3.58504058273727 bayes_pls_golite062009
  • catalytic activity
    		•  2.41506805547596 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.31681514717218 bayes_pls_golite062009
  • pristanoyl-CoA oxidase activity
    		•  2.26651221125135 bayes_pls_golite062009
  • binding
    		•  1.84962038137824 bayes_pls_golite062009
  • palmitoyl-CoA oxidase activity
    		•  1.72613267428428 bayes_pls_golite062009
  • long-chain-acyl-CoA dehydrogenase activity
    		•  1.53039234278399 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.634990683062526 bayes_pls_golite062009
  • butyryl-CoA dehydrogenase activity
    		•  0.400090490265931 bayes_pls_golite062009
  • protein binding
    		•  0.0853302624128481 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle