YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347481, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	385 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347481, gi|....

Description	E-value	Query Range	Subject Range
gi\|77996195, gi\|... - gi\|78044080\|ref\|YP_360183.1\| butyryl-CoA dehydrogenase [Carboxydothermus hydrogenoformans Z-2901], g...	457.0	[0..1]	[379..1]
gi\|221087039, gi... - gi\|221087039\|ref\|ZP_03556579.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC61], gi... gi\|229331248, gi... - gi\|229497822\|ref\|ZP_04391521.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC52], gi... gi\|56381770, gi\|... - gi\|56421928\|ref\|YP_149246.1\| acyl-CoA dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56381770\|d...	447.0	[0..1]	[378..1]
gi\|19704756, gi\|... - gi\|19715082\|gb\|AAL95617.1\| ACYL-COA dehydrogenase, short-chain specific [Fusobacterium nucleatum sub...	445.0	[0..1]	[385..1]
gi\|89089326, gi\|... - gi\|89095580\|ref\|ZP_01168474.1\| acyl-CoA dehydrogenase [Bacillus sp. NRRL B-14911], gi\|89089326\|gb\|EA...	445.0	[0..1]	[378..1]
gi\|228670589, gi... - gi\|229112755\|ref\|ZP_04242287.1\| Acyl-CoA dehydrogenase [Bacillus cereus Rock1-15], gi\|228670589\|gb\|E... gi\|218160858, gi... - gi\|218232901\|ref\|YP_002370118.1\| acyl-CoA dehydrogenase [Bacillus cereus B4264], gi\|218160858\|gb\|ACK... gi\|228722321, gi... - gi\|229051012\|ref\|ZP_04194560.1\| Acyl-CoA dehydrogenase [Bacillus cereus AH676], gi\|228722321\|gb\|EEL7... gi\|228798087, gi... - gi\|228961605\|ref\|ZP_04123214.1\| Acyl-CoA dehydrogenase [Bacillus thuringiensis serovar pakistani str... gi\|229147881, gi... - gi\|229147881\|ref\|ZP_04276222.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228635531\|gb\|... gi\|229130590, gi... - gi\|229130590\|ref\|ZP_04259546.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228652929\|gb\|... gi\|29898933, gi\|... - gi\|30023372\|ref\|NP_835003.1\| Acyl-CoA dehydrogenase, short-chain specific [Bacillus cereus ATCC 1457...	444.0	[0..1]	[378..1]
gi\|22778698, gi\|... - gi\|23100465\|ref\|NP_693932.1\| acyl-CoA dehydrogenase [Oceanobacillus iheyensis HTE831], gi\|22778698\|d...	441.0	[0..1]	[378..1]
gi\|42784517, gi\|... - gi\|42784517\|ref\|NP_981764.1\| acyl-CoA dehydrogenase [Bacillus cereus ATCC 10987], gi\|42740449\|gb\|AAS...	441.0	[0..1]	[378..1]
gi\|52140219, gi\|... - gi\|52140219\|ref\|YP_086610.1\| acyl-CoA dehydrogenase [Bacillus cereus E33L], gi\|51973688\|gb\|AAU15238....	441.0	[0..1]	[378..1]

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Predicted Domain #1

Region A:
Residues: [1-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFNFNEDQR QFAELARQFA TDELAPFAAK WDEEHHFPKD VIQKAGELGF CSLYSPESEG  60
   61 GMGLSRLDAS IIFEELSKGC TATTAMLTIH NMATWMVTTW GTETLRQAWS EPLTTGQMLA 120
  121 SYCLTEPGAG SDAASLQTKA VPDGDEYVVS GSKMFISGAG STELLVVMCR TGQAGPKGIS 180
  181 AIAIPADSEG IIYGKAEDKM GWNAQPTRLV TFDNVRVPVA NLLGEEGQGF TFAMKGLDGG 240
  241 RINIATCSVG TAQAALERAS QYMNERQQFG KPLAAFQALQ FKLADMATEL VAARQMVRLA 300
  301 AFKLDSGDPE GTAYCAMAKR FATDVGFQVC DAALQIHGGY GYIREYPLER HFRDVRVHQI 360
  361 LEGTNEIMRL IIARRLLDEN AGQIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1rx0A
Description:	Crystal structure of isobutyryl-CoA dehydrogenase complexed with substrate/ligand.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acyl-CoA oxidase activity	7.85164875699474	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.69964776555327	bayes_pls_golite062009
acyl-CoA dehydrogenase activity	6.0252876667118	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	5.78129971677842	bayes_pls_golite062009
isovaleryl-CoA dehydrogenase activity	4.66102768687662	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	4.57415724042946	bayes_pls_golite062009
oxidoreductase activity	3.99827953439804	bayes_pls_golite062009
RNA polymerase II transcription mediator activity	3.58504058273727	bayes_pls_golite062009
catalytic activity	2.41506805547596	bayes_pls_golite062009
transcription regulator activity	2.31681514717218	bayes_pls_golite062009
pristanoyl-CoA oxidase activity	2.26651221125135	bayes_pls_golite062009
binding	1.84962038137824	bayes_pls_golite062009
palmitoyl-CoA oxidase activity	1.72613267428428	bayes_pls_golite062009
long-chain-acyl-CoA dehydrogenase activity	1.53039234278399	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.634990683062526	bayes_pls_golite062009
butyryl-CoA dehydrogenase activity	0.400090490265931	bayes_pls_golite062009
protein binding	0.0853302624128481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: