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Protein Overview: gi|24346871, gi|...

General Information:
Name(s) found: gi|24372786 [NCBI NR]
gi|24346871 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24372786|ref|NP_716828.1| transcription elongation factor NusA [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346871|gb|AAN54273.1|AE015564_4 N utilization substance protein A [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 499 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription termination [ISSLink to PubMed article]
    Molecular Function: transcription termination factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKEILLVAE AVSNEKAVPR EKIFEALETA LATATKKKYE GDIDVRVAID RKTGAYETFR  60
   61 RWMVIDDNGV ALENPYREIT LEAARFEEPE IQPGEYIEDQ IESVAFDRIT TQTAKQVIVQ 120
  121 KVREAERAQV VEQFQDKEGE LITGVVKKAT RESVVVDLGN NADGVLFRED LISRESFRPG 180
  181 DRVRALLYSV RPEARGAQLF LTRTKPDMLI ELFRVEVPEI ADELIEVMGA ARDPGARAKI 240
  241 AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DDNPAQYVIN AMAPADVASI 300
  301 IVDEDNHSMD IAVEAESLAQ AIGRNGQNVR LATQLTGWEL NVMTVEDMNK KHQAESAKVK 360
  361 SLFMKSLDVD EDFAQVLADE GFTSLEEVAY VPVSELLAID GFDEDLVEAL RERAKAAIST 420
  421 RALASEEALD GVEPSEELLA LEGVERHLAY VLASKGIVTL EDLAEQGIDD LIEIEELTEE 480
  481 KAGELIMAAR NICWFGEEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..354] PSI-BLAST 90.154902 Crystal structure of NusA from Thermotoga maritima: a structure-based role of the N-terminal domain
    2 View Details [355..433] PSI-BLAST 12.522879 NMR structure of the carboxyterminal domains of Escherichia coli NusA
    3 View Details [434..499] PSI-BLAST 21.154902 NMR structure of the carboxyterminal domains of Escherichia coli NusA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription termination factor activity
    		•  5.95012300460543 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.08684997768441 bayes_pls_golite062009
  • binding
    		•  1.8883583267074 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20938494814687 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.860693644487058 bayes_pls_golite062009
  • DNA binding
    		•  0.814370062643769 bayes_pls_golite062009
  • protein binding
    		•  0.731201599320953 bayes_pls_golite062009
  • structural molecule activity
    		•  0.570047646271216 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.440010017405756 bayes_pls_golite062009
  • translation regulator activity
    		•  0.31332179848255 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.263197317040851 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.19668406318255 bayes_pls_golite062009
  • catalytic activity
    		•  0.10089766806364 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle