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Protein Overview: RPIA_SHEON

General Information:
Name(s) found: RPIA_SHEON [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Ribose-5-phosphate isomerase A OS=Shewanella oneidensis (strain MR-1) GN=rpiA PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 219 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pentose-phosphate shunt [ISSLink to PubMed article]
    Molecular Function: ribose-5-phosphate isomerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDEMKKAA GWAALKYVEK DSIVGVGTGS TVNHFIDALA TMKADIEGAV SSSEASTQKM  60
   61 KALGIPVYDL NSVDKLSVYV DGADEINGHM DMIKGGGAAL TREKIVAAVA EKFVCIVDNT 120
  121 KQVDILGEFP LPVEVIPMAR SYVARQLVKL GGDPVYREGV ITDNGNVILD VYNLKILNPK 180
  181 ELEDKINAIV GVVTNGLFAK RGADVLLVGT PEGVKTFTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..219] PSI-BLAST 59.0 D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribose-5-phosphate isomerase activity
    		•  2.23318567990318 bayes_pls_golite062009
  • 6-phosphogluconolactonase activity
    		•  1.97756803122763 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.15193795385115 bayes_pls_golite062009
  • binding
    		•  0.867979574569016 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  0.61058174487002 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.527142798518238 bayes_pls_golite062009
  • DNA binding
    		•  0.465566131334457 bayes_pls_golite062009
  • catalytic activity
    		•  0.424959044318554 bayes_pls_golite062009
  • glucosamine-6-phosphate deaminase activity
    		•  0.111185777194415 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  0.075853172283603 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle