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Protein Overview: gi|24346362, gi|...

General Information:
Name(s) found: gi|24372399 [NCBI NR]
gi|24346362 [NCBI NR]
Description(s) found:
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  • gi|24372399|ref|NP_716441.1| ribokinase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346362|gb|AAN53886.1|AE015525_9 ribokinase [Shewanella oneidensis MR-1] [NCBI NR]
  • ribokinase [Shewanella oneidensis MR-1]gi|24346362|gb|AAN53886.1| ribokinase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • ribokinase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 303 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: D-ribose metabolic process [ISSLink to PubMed article]
    Molecular Function: ribokinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHILVIGSA NADHVMNFEY LPVPGQTLKS RSYRLEHGGK GANQAVACAR LCLPDSRVDF  60
   61 ICHLGQDSIG NEMRDSWLKD GIQAEGITLV DNVSTGTAMI FVADNGENAI GIAAGANAHL 120
  121 TPLELEKHYA LFANAQYLLI QLETPTETVS NALQMAKRLG ITTVLNPAPA ATQELDYLKW 180
  181 VDIITPNETE AEALTGIEVK HEEDAKLAAQ WLHQQGITTV VITLGSKGAF ISSPGFTGLI 240
  241 PALTVQAIDT VAAGDTFNGA LVVGLSEGMS IAAAVSFANA ASAITVTREG AQRAIPYRSE 300
  301 VSR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..303] PSI-BLAST 61.522879 Ribokinase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribokinase activity
    		•  4.13972810632318 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  3.53872211951287 bayes_pls_golite062009
  • kinase activity
    		•  2.44230326483029 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.43969902311075 bayes_pls_golite062009
  • transferase activity
    		•  2.15883296431019 bayes_pls_golite062009
  • phosphofructokinase activity
    		•  1.98381934960918 bayes_pls_golite062009
  • catalytic activity
    		•  1.74474587246986 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.01768986812996 bayes_pls_golite062009
  • binding
    		•  0.750579388499649 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43271347210671 bayes_pls_golite062009
  • DNA binding
    		•  0.0886731070705062 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0561488099067549 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle