YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346362, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346362, gi|....

Description	E-value	Query Range	Subject Range
gi\|28203058, gi\|... - gi\|28210620\|ref\|NP_781564.1\| ribokinase [Clostridium tetani E88], gi\|28203058\|gb\|AAO35501.1\| ribokin...	277.0	[0..2]	[302..4]
gi\|20515184, gi\|... - gi\|20806728\|ref\|NP_621899.1\| ribokinase family sugar kinase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806728 - gi\|20806728\|ref\|NP_621899.1\| Sugar kinase, ribokinase family [Thermoanaerobacter tengcongensis MB4] gi\|254478103, gi... - gi\|254478103\|ref\|ZP_05091486.1\| ribokinase [Carboxydibrachium pacificum DSM 12653], gi\|223490092\|ref...	265.0	[0..1]	[303..1]
gi\|106882307, gi... - gi\|119944129\|ref\|YP_941809.1\| ribokinase [Psychromonas ingrahamii 37], gi\|119862733\|gb\|ABM02210.1\| r...	264.0	[0..1]	[303..1]
gi\|91224727, gi\|... - gi\|91224727\|ref\|ZP_01259987.1\| ribokinase [Vibrio alginolyticus 12G01], gi\|91190273\|gb\|EAS76542.1\| r...	264.0	[0..1]	[302..1]
gi\|57865524, gi\|... - gi\|57865524\|ref\|YP_189656.1\| ribokinase [Staphylococcus epidermidis RP62A], gi\|57636182\|gb\|AAW52970....	262.0	[0..2]	[302..4]
gi\|28809384, gi\|... - gi\|28900938\|ref\|NP_800593.1\| ribokinase [Vibrio parahaemolyticus RIMD 2210633], gi\|28809384\|dbj\|BAC6... gi\|28809384 - gi\|28809384\|dbj\|BAC62426.1\| ribokinase [Vibrio parahaemolyticus RIMD 2210633] gi\|149750024, gi... - gi\|153836675\|ref\|ZP_01989342.1\| ribokinase [Vibrio parahaemolyticus AQ3810], gi\|149750024\|gb\|EDM6076...	262.0	[0..1]	[302..1]
gi\|52424338, gi\|... - gi\|52424338\|ref\|YP_087475.1\| RbsK protein [Mannheimia succiniciproducens MBEL55E], gi\|52306390\|gb\|AA...	262.0	[0..1]	[300..5]
gi\|27469004, gi\|... - gi\|27469004\|ref\|NP_765641.1\| ribokinase [Staphylococcus epidermidis ATCC 12228], gi\|27316553\|gb\|AAO0...	261.0	[0..2]	[302..4]
gi\|254227589, gi... - gi\|75855471\|ref\|ZP_00763121.1\| COG0524: Sugar kinases, ribokinase family [Vibrio sp. Ex25], gi\|25422...	260.0	[0..1]	[302..1]
gi\|242258203, gi... - gi\|242258203\|ref\|ZP_04803029.1\| ribokinase [Thermoanaerobacter sp. X513], gi\|242230274\|gb\|EES32659.1... gi\|241904638, gi... - gi\|241904638\|ref\|ZP_04789317.1\| ribokinase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|2418... gi\|167038425, gi... - gi\|76797420\|ref\|ZP_00779739.1\| Ribokinase, bacterial [Thermoanaerobacter ethanolicus ATCC 33223], gi... gi\|167038832, gi... - gi\|167038832\|ref\|YP_001661817.1\| ribokinase [Thermoanaerobacter sp. X514], gi\|166853072\|gb\|ABY91481....	259.0	[0..1]	[303..1]

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Predicted Domain #1

Region A:
Residues: [1-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHILVIGSA NADHVMNFEY LPVPGQTLKS RSYRLEHGGK GANQAVACAR LCLPDSRVDF  60
   61 ICHLGQDSIG NEMRDSWLKD GIQAEGITLV DNVSTGTAMI FVADNGENAI GIAAGANAHL 120
  121 TPLELEKHYA LFANAQYLLI QLETPTETVS NALQMAKRLG ITTVLNPAPA ATQELDYLKW 180
  181 VDIITPNETE AEALTGIEVK HEEDAKLAAQ WLHQQGITTV VITLGSKGAF ISSPGFTGLI 240
  241 PALTVQAIDT VAAGDTFNGA LVVGLSEGMS IAAAVSFANA ASAITVTREG AQRAIPYRSE 300
  301 VSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.522879
Match:	1gqtA
Description:	Ribokinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribokinase activity	4.13972810632318	bayes_pls_golite062009
carbohydrate kinase activity	3.53872211951287	bayes_pls_golite062009
kinase activity	2.44230326483029	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.43969902311075	bayes_pls_golite062009
transferase activity	2.15883296431019	bayes_pls_golite062009
phosphofructokinase activity	1.98381934960918	bayes_pls_golite062009
catalytic activity	1.74474587246986	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.01768986812996	bayes_pls_golite062009
binding	0.750579388499649	bayes_pls_golite062009
nucleic acid binding	0.43271347210671	bayes_pls_golite062009
DNA binding	0.0886731070705062	bayes_pls_golite062009
transcription regulator activity	0.0561488099067549	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: