YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346362, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHILVIGSA NADHVMNFEY LPVPGQTLKS RSYRLEHGGK GANQAVACAR LCLPDSRVDF  60
   61 ICHLGQDSIG NEMRDSWLKD GIQAEGITLV DNVSTGTAMI FVADNGENAI GIAAGANAHL 120
  121 TPLELEKHYA LFANAQYLLI QLETPTETVS NALQMAKRLG ITTVLNPAPA ATQELDYLKW 180
  181 VDIITPNETE AEALTGIEVK HEEDAKLAAQ WLHQQGITTV VITLGSKGAF ISSPGFTGLI 240
  241 PALTVQAIDT VAAGDTFNGA LVVGLSEGMS IAAAVSFANA ASAITVTREG AQRAIPYRSE 300
  301 VSR

Type	Start	End	Confidence
Cytoplasmic	1	222	0.62
Transmembrane Helix	223	240	0.46
Non-Cytoplasmic	241	267	0.74
Transmembrane Helix	268	286	0.59
Cytoplasmic	287	303	0.61