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Protein Overview: gi|24346016, gi|...

General Information:
Name(s) found: gi|24372126 [NCBI NR]
gi|24346016 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372126|ref|NP_716168.1| arsenical resistence operon repressor [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346016|gb|AAN53613.1|AE015500_12 arsenical resistence operon repressor [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 114 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to arsenic [ISSLink to PubMed article]
    regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    Molecular Function: transcription repressor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPVTFFKAL ADETRLKCLL LIQREGELCV CELMAALSEI QPKVSRHLAQ LKKAGLLVDR  60
   61 RQGQWVFYRI NAELSPWCQQ VLARTCDDND IFLQDNLRNL CQMGGRPERA KACC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] PSI-BLAST 18.0 Crystal Structure of the Staphylococcus aureus pI258 CadC

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.98990675336286 bayes_pls_golite062009
  • DNA binding
    		•  3.4273272886116 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38054693035398 bayes_pls_golite062009
  • transcription factor activity
    		•  2.80110428028438 bayes_pls_golite062009
  • binding
    		•  2.18911933843505 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.14577668739338 bayes_pls_golite062009
  • transcription activator activity
    		•  0.53294679084865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.53285802828572 bayes_pls_golite062009
  • protein binding
    		•  0.035220363090062 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle