YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346016, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346016, gi|....

Description	E-value	Query Range	Subject Range
gi\|63255458, gi\|... - gi\|66044751\|ref\|YP_234592.1\| regulatory protein, ArsR [Pseudomonas syringae pv. syringae B728a], gi\|...	113.0	[0..1]	[114..20]
gi\|113948080, gi... - gi\|160877064\|ref\|YP_001556380.1\| ArsR family transcriptional regulator [Shewanella baltica OS195], g...	113.0	[0..1]	[114..1]
gi\|68541641, gi\|... - gi\|68541641\|ref\|ZP_00581383.1\| regulatory protein, ArsR [Shewanella baltica OS155], gi\|68520700\|gb\|E...	112.0	[0..1]	[114..1]
gi\|11691633 - gi\|11691633\|emb\|CAC18652.1\| arsenic resistance operon regulator [Pseudomonas putida]	111.0	[0..1]	[114..5]
gi\|68516169, gi\|... - gi\|68546341\|ref\|ZP_00585889.1\| regulatory protein, ArsR [Shewanella amazonensis SB2B], gi\|68516169\|g...	111.0	[0..1]	[114..7]
gi\|113890429, gi... - gi\|78688592\|ref\|ZP_00853260.1\| regulatory protein, ArsR [Shewanella sp. MR-7], gi\|78511973\|gb\|EAP253...	110.0	[0..1]	[114..1]
gi\|82495447, gi\|... - gi\|82495447\|ref\|ZP_00881023.1\| regulatory protein, ArsR [Shewanella sp. MR-4], gi\|82406631\|gb\|EAP472...	109.0	[0..1]	[114..1]
gi\|24983441, gi\|... - gi\|26988658\|ref\|NP_744083.1\| arsenic resistance transcriptional regulator [Pseudomonas putida KT2440...	109.0	[0..6]	[113..20]
gi\|78684286, gi\|... - gi\|78684286\|ref\|ZP_00849071.1\| regulatory protein, ArsR [Shewanella sp. ANA-3], gi\|78508038\|gb\|EAP21...	109.0	[0..1]	[114..1]
gi\|77811271, gi\|... - gi\|77813765\|ref\|ZP_00813038.1\| regulatory protein, ArsR [Shewanella putrefaciens CN-32], gi\|77811271... gi\|117920778, gi... - gi\|78688131\|ref\|ZP_00852851.1\| regulatory protein, ArsR [Shewanella sp. ANA-3], gi\|78504127\|gb\|EAP17...	108.0	[0..1]	[114..2]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPVTFFKAL ADETRLKCLL LIQREGELCV CELMAALSEI QPKVSRHLAQ LKKAGLLVDR  60
   61 RQGQWVFYRI NAELSPWCQQ VLARTCDDND IFLQDNLRNL CQMGGRPERA KACC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1u2wA
Description:	Crystal Structure of the Staphylococcus aureus pI258 CadC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription repressor activity	2.14577668739338	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: