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Protein Overview: gi|24345828, gi|...

General Information:
Name(s) found: gi|24371976 [NCBI NR]
gi|24345828 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24371976|ref|NP_716018.1| type I restriction-modification system, R subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345828|gb|AAN53463.1|AE015486_4 type I restriction-modification system, R subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1033 amino acids

    Gene Ontology:
    Cellular Component: Type I site-specific deoxyribonuclease complex [ISSLink to PubMed article]
    Biological Process: DNA restriction-modification system [ISSLink to PubMed article]
    Molecular Function: Type I site-specific deoxyribonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQDELHKVE LPAIAQLSLL GWQYVAGAKL TPEYHERPYL RDVVLVGRLE AAIKRINPWI  60
   61 NDENLRKVCR DITHPNFVGL MEYNQAIYQT LVNYLSVEQD VGKGRKGQTV KLIDFDNLAA 120
  121 NEFICTSQFK VEGVNQNIIP DIVCFINGLP LAVIECKSPY ISAPISEGIN QLRRYANLRN 180
  181 SVDDEGAQRL FWYNQLMVST CRDQAKVGTI SSNASHYADW KDAYPFTDTT LSEQNLSQAF 240
  241 SRNSLDDMQV NDNPALYTAT SSNYDAITAV TAQQRLIAGI FSPASFLDIL QNFIIFEPVE 300
  301 GKLIKKVARY QQYRAVNKVI ERLKTGQDRK EKSGVVWHTQ GSGKSLTMVM LAVKMRRDPV 360
  361 LKQYKLVFIT DRTQLDEQLS STFRAAQGET IYNAGSVAEL KALLKKDSSD LVTAMVQKFL 420
  421 DLEKELSTNN ENEGFINLNP SDKIIVLADE AHRTQFGGLA MTINAALPNA PKIGFTGTPL 480
  481 LKTQKMDKAF GGYIDEYKIN QAVDDGATVR ILYEGRQVKT EVAGESLDKL FEAYFGSYSK 540
  541 EEQREIKQKY GVERAVREAP ARIRWVCMDL LEHYRKHIQP DGFKAMIVVG SRHAATIFKK 600
  601 TLDELGAPPS EVIISGYHND EAYIAVHTDK TKQKKIIQDF TKPLSENPVA FLIVKDMLLT 660
  661 GFDAPIAQVM YIDRKLQDHT LMQAIARVNR TYAKKECGFI VDYFGLSNHL IEAMEMFSSD 720
  721 DVEGTYQSLK DEIPKLKATH TLAISFFRHI KNKDVDSYVL ALKEETVRAQ FDMAFKRFAK 780
  781 QMNIVLPDVA AAPFLADMKL LGKVHNSARN QYRDAGLDMT DIGAKVRKLV DEHILSTGVD 840
  841 PKIPPIDLLA ANFKESIRPE KSAESKASEI ESAIKHHITV KLEEDPEYYK SLSLRLRDII 900
  901 EKTAGQWEQQ LELLLAMVDT IEIDRRRAAK DAGLSETEFA FYNILTAEVT QTSDIEVIDE 960
  961 HQLIEIKTIT QNLVAMFDEA TQIVDFFNKG DEIKRLKKEI KRAVIDASFS NVELISNLQD1020
 1021 RFMELAKHKF NKQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..884] PSI-BLAST 60.69897 Crystal structure of Escherichia coli transcription-repair coupling factor
    2 View Details [885..1033] PSI-BLAST 51.045757 Crystal structure of the DNA repair protein UvrB point mutant Y96A revealing a novel fold for domain 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.1653223755451 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.923452757551011 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.923391844349459 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.920821955769652 bayes_pls_golite062009
  • nucleotide binding
    		•  0.917754212279227 bayes_pls_golite062009
  • helicase activity
    		•  0.895387263223335 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.8104901979223 bayes_pls_golite062009
  • ATP binding
    		•  0.60527666756293 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.573214556107072 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.554530910579109 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216266069700019 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0398638249772338 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle