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Protein Overview: gi|24345617, gi|...

General Information:
Name(s) found: gi|24371812 [NCBI NR]
gi|24345617 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24371812|ref|NP_715854.1| biotin--protein ligase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345617|gb|AAN53299.1|AE015471_4 birA bifunctional protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 319 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biotin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: biotin-[acetyl-CoA-carboxylase] ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNWVRKRQ ILGLLSNEHF VSGEELATQL GISRAAVSKH VDTLEDYGVA IFSVKGRGYK  60
   61 LANPISLIDS SRLIQAIDNR CFYFDEIPST NGFMLGHTSE LKSGDLCVAE YQSAGRGRRG 120
  121 RTWVSPYGHH LYFSQFWSFP QGMAQAMGLS LVVACSLVEV LKSFGVENVG VKWPNDIYLN 180
  181 FKKLAGILIE MSGQADSECQ LIIGIGVNMA MSEGQGKGID QPWSDLSGLT CIPNKTDLVI 240
  241 ALHKQLKRDI QLFEREGLVA FKTRWQEADL FHGKEIRLLM GENHLDGICR GIDEQGAVLL 300
  301 ENADGIQAYI GGEISLRPI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..319] PSI-BLAST 87.0 THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  3.33073922220594 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.33073922220594 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  3.33034630936933 bayes_pls_golite062009
  • ligase activity
    		•  3.05852492533937 bayes_pls_golite062009
  • catalytic activity
    		•  2.36416267096403 bayes_pls_golite062009
  • biotin-[acetyl-CoA-carboxylase] ligase activity
    		•  1.84290209862678 bayes_pls_golite062009
  • biotin-protein ligase activity
    		•  1.84290209862678 bayes_pls_golite062009
  • transcription activator activity
    		•  0.53294679084865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.53285802828572 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.514652697234715 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.268902262140417 bayes_pls_golite062009
  • binding
    		•  0.204413263196103 bayes_pls_golite062009
  • DNA binding
    		•  0.114801541522161 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle