YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345617, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345617, gi|....

Description	E-value	Query Range	Subject Range
gi\|126176359, gi... - gi\|68544816\|ref\|ZP_00584412.1\| Biotin--acetyl-CoA-carboxylase ligase [Shewanella baltica OS155], gi\|...	337.0	[0..1]	[317..1]
gi\|113906025, gi... - gi\|160873310\|ref\|YP_001552626.1\| biotin--protein ligase [Shewanella baltica OS195], gi\|160858832\|gb\|...	334.0	[0..1]	[317..1]
gi\|37200105, gi\|... - gi\|37681353\|ref\|NP_935962.1\| biotin--protein ligase [Vibrio vulnificus YJ016], gi\|37200105\|dbj\|BAC95...	333.0	[0..1]	[317..1]
gi\|82721435, gi\|... - gi\|82741166\|ref\|ZP_00903893.1\| Biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. W3-18-1], gi\|82... gi\|77813812, gi\|... - gi\|77813812\|ref\|ZP_00813085.1\| Biotin--acetyl-CoA-carboxylase ligase [Shewanella putrefaciens CN-32]...	333.0	[0..1]	[318..1]
gi\|117918641, gi... - gi\|78688398\|ref\|ZP_00853092.1\| Biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. ANA-3], gi\|7850...	333.0	[0..1]	[318..1]
gi\|82498380, gi\|... - gi\|82498380\|ref\|ZP_00883880.1\| Biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. MR-4], gi\|82403...	331.0	[0..1]	[318..1]
gi\|165940016, gi... - gi\|89102989\|ref\|ZP_01175587.1\| COG0340: Biotin-(acetyl-CoA carboxylase) ligase [Yersinia pestis biov... gi\|108809419, gi... - gi\|108809419\|ref\|YP_653335.1\| biotin--protein ligase [Yersinia pestis Antiqua], gi\|108781332\|gb\|ABG1... gi\|22124387, gi\|... - gi\|22124387\|ref\|NP_667810.1\| biotin--protein ligase [Yersinia pestis KIM], gi\|21957168\|gb\|AAM84061.1... gi\|25293809 - pir\|\|AG0457 biotin-[acetyl-CoA-carboxylase] ligase (EC 6.3.4.15) [imported] - Yersinia pestis (strai... gi\|115349375, gi... - gi\|218930764\|ref\|YP_002348639.1\| biotin--protein ligase [Yersinia pestis CO92], gi\|16123896\|ref\|NP_4... gi\|45443040, gi\|... - gi\|45443040\|ref\|NP_994579.1\| biotin--protein ligase [Yersinia pestis biovar Microtus str. 91001], gi... gi\|229682403, gi... - gi\|229900548\|ref\|ZP_04515675.1\| bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/DN... gi\|229836497, gi... - gi\|229836497\|ref\|ZP_04456664.1\| bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/DN... gi\|229695808, gi... - gi\|229839442\|ref\|ZP_04459601.1\| bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/DN... gi\|149289315, gi... - gi\|153997207\|ref\|ZP_02022314.1\| bifunctional protein BirA [Yersinia pestis CA88-4125], gi\|149289315\|... gi\|229686949, gi... - gi\|229900005\|ref\|ZP_04515143.1\| bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/DN... gi\|145212326, gi... - gi\|145600630\|ref\|YP_001164706.1\| biotin--protein ligase [Yersinia pestis Pestoides F], gi\|145212326\|... gi\|165988938, gi... - gi\|166012137\|ref\|ZP_02233035.1\| birA bifunctional protein [Yersinia pestis biovar Antiqua str. E1979... gi\|165926369, gi... - gi\|165926369\|ref\|ZP_02222201.1\| birA bifunctional protein [Yersinia pestis biovar Orientalis str. F1... gi\|167052085, gi... - gi\|167399581\|ref\|ZP_02305105.1\| birA bifunctional protein [Yersinia pestis biovar Antiqua str. UG05-... gi\|77632901, gi\|... - gi\|77632901\|ref\|ZP_00795073.1\| COG0340: Biotin-(acetyl-CoA carboxylase) ligase [Yersinia pestis Ango... gi\|166204191, gi... - gi\|166214628\|ref\|ZP_02240663.1\| birA bifunctional protein [Yersinia pestis biovar Antiqua str. B4200... gi\|77631224, gi\|... - gi\|77631224\|ref\|ZP_00793810.1\| COG0340: Biotin-(acetyl-CoA carboxylase) ligase [Yersinia pseudotuber... gi\|167426806, gi... - gi\|167426806\|ref\|ZP_02318559.1\| birA bifunctional protein [Yersinia pestis biovar Mediaevalis str. K... gi\|167422998, gi... - gi\|167422998\|ref\|ZP_02314751.1\| birA bifunctional protein [Yersinia pestis biovar Orientalis str. MG... gi\|169749120, gi... - gi\|170022586\|ref\|YP_001719091.1\| biotin--protein ligase [Yersinia pseudotuberculosis YPIII], gi\|1697... gi\|167470586 - gi\|167470586\|ref\|ZP_02335290.1\| birA bifunctional protein [Yersinia pestis FV-1]	323.0	[0..3]	[319..2]
gi\|186893629, gi... - gi\|186893629\|ref\|YP_001870741.1\| biotin--protein ligase [Yersinia pseudotuberculosis PB1/+], gi\|1866... Q66FR2\|Q66FR2_YERPS - Bifunctional protein BirA - Yersinia pseudotuberculosis gi\|51587910, gi\|... - gi\|51594628\|ref\|YP_068819.1\| biotin--protein ligase [Yersinia pseudotuberculosis IP 32953], gi\|51587...	323.0	[0..3]	[319..2]
gi\|77976219 - gi\|77976219\|ref\|ZP_00831731.1\| COG0340: Biotin-(acetyl-CoA carboxylase) ligase [Yersinia intermedia ...	322.0	[0..3]	[319..2]
gi\|77959935 - gi\|77959935\|ref\|ZP_00823849.1\| COG0340: Biotin-(acetyl-CoA carboxylase) ligase [Yersinia mollaretii ...	321.0	[0..9]	[319..8]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNWVRKRQ ILGLLSNEHF VSGEELATQL GISRAAVSKH VDTLEDYGVA IFSVKGRGYK  60
   61 LANPISLIDS SRLIQAIDNR CFYFDEIPST NGFMLGHTSE LKSGDLCVAE YQSAGRGRRG 120
  121 RTWVSPYGHH LYFSQFWSFP QGMAQAMGLS LVVACSLVEV LKSFGVENVG VKWPNDIYLN 180
  181 FKKLAGILIE MSGQADSECQ LIIGIGVNMA MSEGQGKGID QPWSDLSGLT CIPNKTDLVI 240
  241 ALHKQLKRDI QLFEREGLVA FKTRWQEADL FHGKEIRLLM GENHLDGICR GIDEQGAVLL 300
  301 ENADGIQAYI GGEISLRPI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.0
Match:	1biaA
Description:	THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	3.33073922220594	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.33073922220594	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	3.33034630936933	bayes_pls_golite062009
ligase activity	3.05852492533937	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009
biotin-[acetyl-CoA-carboxylase] ligase activity	1.84290209862678	bayes_pls_golite062009
biotin-protein ligase activity	1.84290209862678	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription regulator activity	0.514652697234715	bayes_pls_golite062009
nucleic acid binding	0.268902262140417	bayes_pls_golite062009
binding	0.204413263196103	bayes_pls_golite062009
DNA binding	0.114801541522161	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: