Protein Overview: UBX4_YEAST

General Information:
Name(s) found:	UBX4_YEAST [Swiss-Prot]
Description(s) found:	UBX domain-containing protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBX4 PE=1 SV=1 [Swiss-Prot]
Organism:	Saccharomyces cerevisiae S288c
Length:	416 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMVTVKYNF QLFKCKVSLN STLNDVLHQS IQFFQLHTSS NDWSLIHLDK PVPLDLPWRL  60
   61 LNLPTGVNLE LSKSSNFPVA NKTNREDIPF NTIKIRFQIP GRDSVVKEMP SDQPIAPILR 120
  121 QMSGAAGDDF KIQVFSKIIE FKTIKDENLT LENLGIQEPS SVRLIFNNTS HSEGISANSA 180
  181 IHPKQTPPTM TNPETVASLP PHELHKPSVF LPSDEPLAVI KDQIEDEEDY ELTVEQAKKY 240
  241 QKMLSSKAGT LGGPILTKRL REQSANNLPK KNKAISECLL RVKFPDRSHI QIAFKPNEDM 300
  301 RTVYNVVSQF LIDENMPFTL NQSHPFKPLA KDDKKLLDDL EFGSKTMLLF ETNSNSNGPL 360
  361 IKAHLLEDAQ KITHETRTTP SVNTINKSNP QGPSDNATSI KKTLNRVPKW MKLSKK

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..126]	deduced	N/A	No confident structure predictions are available.
2	View Details	[127..225]	MSA	3.117997	View MSA. No confident structure predictions are available.
3	View Details	[226..416]	PSI-BLAST	17.522879	p47

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
binding	2.11588141989606	bayes_pls_golite062009
protein binding	1.75262085947538	bayes_pls_golite062009
small conjugating protein ligase activity	1.64626529520014	bayes_pls_golite062009
ubiquitin-protein ligase activity	1.03640529353043	bayes_pls_golite062009
acid-amino acid ligase activity	0.778769490362734	bayes_pls_golite062009
nucleic acid binding	0.406724367405638	bayes_pls_golite062009
hydrolase activity	0.266557627363523	bayes_pls_golite062009
DNA binding	0.102021710653816	bayes_pls_golite062009
transcription regulator activity	0.0672274772804511	bayes_pls_golite062009

2

No functions predicted.

3

Term	Confidence	Notes
binding	2.19381585790185	bayes_pls_golite062009
protein binding	1.89134588490127	bayes_pls_golite062009
small conjugating protein ligase activity	1.83465130904364	bayes_pls_golite062009
ubiquitin-protein ligase activity	1.16468510691469	bayes_pls_golite062009
acid-amino acid ligase activity	0.919595189902044	bayes_pls_golite062009
nucleic acid binding	0.383121378043805	bayes_pls_golite062009
hydrolase activity	0.247201449341942	bayes_pls_golite062009
DNA binding	0.0840213088061073	bayes_pls_golite062009
transcription regulator activity	0.0485636215870291	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle