YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: IRC20_YEAST

General Information:
Name(s) found: IRC20_YEAST [Swiss-Prot]
Description(s) found:
  • Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 1556 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVGALLAR EYNVTAEKCD FFLENGSFDS VIAALPALNQ EQETVTQKVS KNGKELINVA  60
   61 SVNIEIPERI SLSNNGRQLF KFIVDIEILP CENDNEATLV VSSDSVSLFQ IGFKMENNSK 120
  121 IAVDKQLPLI LDICAHKNQE RALRNQLENR KSLERKPSRK RRKKNSNVND PEKLLKSRIH 180
  181 ELSLSYKDFE CSPVVFRYND SSLTWVLSFN LKLKFLNNKF NRFSVEANQI LDLTFSNRDE 240
  241 NEFERYHKHS HIHSNFIQKQ FISQILEYSK DRLSKIKPFL PQSIPDLKVN LLPFQRESVE 300
  301 WMLIKEGHGN SLSDTPTVID EVGLIDFMNE YYAYGYELIA RSPDEVGPSL LWNKLTGYIL 360
  361 TTEDAAHLYN QYRKERLSGD YPVCAKGVLA EEMGLGKTIE ILSLILLNRR KLKDSEATFI 420
  421 DDENRTITKT KTTLIICPNA ILKQWLEEIE LHANSLKWYT YRGYNEIMKD CKTVDEAVQQ 480
  481 LCQYDIIVTS YNIIATEVHH AEFNRSIRSR RLKSPKYDYS SPLALMQFYR IILDEVQMLR 540
  541 SSSTYSAKCT SLLHRIHTWG VSGTPIQNIY NFRMIMSYLK LHPFCDEVDF IRTLQEEIKL 600
  601 RNEAKDYTSN DFVCQLKGVR FSIKDCMNIF YRYDLCIRHS KANVASQIHI PRQHNFIIPL 660
  661 EFAPIEWDNY LNLWNNFLEL SGYNSDGSGS PRVSNAFLNE WLSRLRYICC HALFPEILST 720
  721 RQKRLHGHLS RISNIDDILI SMRMDAFDSL IGYYRERFHL SIKQAQYELE ISNTPAKALE 780
  781 SFIKIRDDLM IHIRQKFNVE DPFDKSLNLS EDEDEHMDER FGEKETSSGD ESDREINGAK 840
  841 NHDNHNNDGM LSNHLKKKGL RAMMNLLHDC YFFLGSVYYN LGTRKLEEAD DKHRKEKTEE 900
  901 VVYSDVFPKN ELEEIEENRL LEQENYANAE ILRKSILSSE ARKVDMTIKM ARTKFAPMTS 960
  961 NIPLRLINIE FDHKNDYSSN LAVSRCFKSL SKLIEGLNEQ TKNFNELLDE LLIIIYEPVH1020
 1021 RTEDDDSTNK IIGNEEYSTS IDSQDKIFSL LGCLEIILQN RDNILTSESE VKIPKHLVPE1080
 1081 GSIISKYQKQ LLNSLRLISG TPLRTVFDEL KNSRIVRRIS SSNESESTIQ NFEDYLLQYE1140
 1141 VESKSLFKYN KQVRESLKIL GSIYNAKTEY YSQLQRISDS LVSLHSLSAP QLSHLIRTIN1200
 1201 KSLGGTLDAK INNIESRLIY LKNLSRLKDT LNDNQILSCS ICLGEVEIGA IIKCGHYFCK1260
 1261 SCILTWLRAH SKCPICKGFC SISEVYNFKF KNSTEKREKE IQEPRREGAD SSQDNSNENS1320
 1321 IISNMSEVEK LFGNKYEQFH QINEVHQIHI KESFGAKIDF VIKLISYLRL KSEQENADPP1380
 1381 QVILYSQKTE YLKVIGKVLK LYHIEHLACL SNTANVGETI NNFKRQPSVT CLLLNVKTLG1440
 1441 AGLNLINAKH IFLLDPILNN SDELQAMGRN NRIGQDEETF VWNFMIRNTV EENILRYKCI1500
 1501 LEERKRKEKS KKGDKYDEAQ DETDNEESDD AKFEISVVDQ EVSNEHLWNC FFHGSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..282] MSA 1.193996 View MSA. No confident structure predictions are available.
    2 View Details [283..718] Pfam 8.638272 SNF2 family N-terminal domain No confident structure predictions are available.
    3 View Details [719..878] MSA 2.253996 View MSA. No confident structure predictions are available.
    4 View Details [879..1236] deduced N/A No confident structure predictions are available.
    5 View Details [1237..1276] Pfam 7.568636 Zinc finger, C3HC4 type (RING finger) No confident structure predictions are available.
    6 View Details [1277..1476] PSI-BLAST 4.522879 Putative DEAD box RNA helicase
    7 View Details [1477..1556] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.68908265056856 bayes_pls_golite062009
  • chromatin binding
    		•  0.901919966053279 bayes_pls_golite062009
  • protein binding
    		•  0.40894004702539 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.280209685341429 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.0640203857327035 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  1.26687146372087 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.420384345567397 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.411077559082206 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.399864241228259 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.398496265411009 bayes_pls_golite062009
  • catalytic activity
    		•  0.234613562021476 bayes_pls_golite062009
  • hydrolase activity
    		•  0.216831145240405 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  1.33062723118115 bayes_pls_golite062009
  • protein binding
    		•  0.278046871496516 bayes_pls_golite062009
    6 No functions predicted.
    7 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle