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Protein Overview: PNP_LISMO

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..723] PSI-BLAST 140.0 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • ribonuclease activity
  • 3.95473097235349 bayes_pls_golite062009
  • exoribonuclease activity
  • 3.2089851107515 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 3.18053249872858 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 2.16830676862423 bayes_pls_golite062009
  • RNA binding
  • 2.05527376734941 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 2.04350689362549 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 2.04350689362549 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 2.04218282227834 bayes_pls_golite062009
  • structural constituent of ribosome
  • 1.90115575554186 bayes_pls_golite062009
  • structural molecule activity
  • 1.69321127364043 bayes_pls_golite062009
  • 1.2099360907571 bayes_pls_golite062009
  • transcription regulator activity
  • 1.20748032530392 bayes_pls_golite062009
  • hydrolase activity
  • 1.18773479836745 bayes_pls_golite062009
  • mRNA binding
  • 1.17402119891853 bayes_pls_golite062009
  • ligase activity
  • 1.06979791212194 bayes_pls_golite062009
  • nucleic acid binding
  • 1.05662964529454 bayes_pls_golite062009
  • transcription termination factor activity
  • 1.01993495617192 bayes_pls_golite062009
  • binding
  • 0.907487229190259 bayes_pls_golite062009
  • catalytic activity
  • 0.878454819018611 bayes_pls_golite062009
  • DNA binding
  • 0.828609700556836 bayes_pls_golite062009
  • nuclease activity
  • 0.69721312877891 bayes_pls_golite062009
  • ATP-dependent peptidase activity
  • 0.66778558090199 bayes_pls_golite062009
  • carbohydrate kinase activity
  • 0.51810239718467 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
  • 0.504302440847948 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 0.477960254167 bayes_pls_golite062009
  • tRNA-specific ribonuclease activity
  • 0.383567539949931 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 0.348601923227652 bayes_pls_golite062009
  • transcription factor activity
  • 0.298729064067577 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.0287026367466632 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle