| Protein: | PNP_LISMO |
| Organism: | Listeria monocytogenes EGD-e |
| Length: | 723 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNP_LISMO.
| Description | E-value | Query Range |
Subject Range |
|
|
652.0 | [0..1] | [723..1] |
|
|
650.0 | [0..1] | [723..1] |
|
|
643.0 | [0..1] | [713..1] |
|
|
641.0 | [0..1] | [711..1] |
|
|
640.0 | [0..1] | [712..1] |
|
|
638.0 | [0..1] | [707..3] |
|
|
638.0 | [0..1] | [721..1] |
|
|
637.0 | [0..1] | [708..1] |
|
|
637.0 | [0..2] | [710..1] |
|
|
636.0 | [0..1] | [710..3] |
|
Region A: Residues: [1-723] |
1 11 21 31 41 51
| | | | | |
1 MSEKQVFSTE WAGKTLSVEV GQLAKQASGA ALIRYGDTVV LTAAVGSKKP RPGDFFPLTV 60
61 NYEEKMYSVG KVPGGFLKRE GRPSDRATLT ARLIDRPIRP LFAEGFRNEV QITSTVFSVD 120
121 QDCSPEMAAM LGSSVALVIS DIPFEGPIAG VDVGRIDGKY VINPTIEQAE KSDISLTVAG 180
181 TYDAINMVEA GAKEVSEEAM LEAIMFGHEE IKRLCEFQQQ IIAAVGKEKR EIELFVSDPE 240
241 LEAEVKAASE GKMKTAIKTE EKKAREAAIE EVKEEILESY KAKELENESE ILSEVAHILE 300
301 MIEKDEMRRL ISQDKIRPDG RKVNEIRPLS SEVGMLPRVH GSGLFTRGQT QALSVCTLAP 360
361 LREHQIIDGL GTEEYKRFMH HYNFPQFSVG ETGPRRAPGR REIGHGALGE RALQYVIPSE 420
421 EEFPYTIRLV SEVLESNGSS SQASICGSTL AMLDAGVPIK APVAGIAMGL VKLGDDYTIL 480
481 SDIQGMEDHF GDMDFKVAGT KDGITALQMD IKIDGLSRQI LDEALTQAKE GRLHILEHLT 540
541 STISAPREEL SAYAPKIITL NIKPEKIKDV IGPGGKQINA IIDETGVKID IEQDGTVYIA 600
601 SQDQAMNRKA IAIIEDIVRE VEVGEVYTGK VRRIEKFGAF VELFKGTDGL VHISELAHER 660
661 VGKVEDILKL GDEVTVKVIE VDQQGRVNLS RKALLEKKEQ PEGDKKPQAE KKFYPKTKKP 720
721 ESK
|
| Detection Method: |  |
| Confidence: | 140.0 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ribonuclease activity | 3.95473097235349 | bayes_pls_golite062009 |
| exoribonuclease activity | 3.2089851107515 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 3.18053249872858 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 2.16830676862423 | bayes_pls_golite062009 |
| RNA binding | 2.05527376734941 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 2.04350689362549 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 2.04350689362549 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 2.04218282227834 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.90115575554186 | bayes_pls_golite062009 |
| structural molecule activity | 1.69321127364043 | bayes_pls_golite062009 |
| 1.2099360907571 | bayes_pls_golite062009 | |
| transcription regulator activity | 1.20748032530392 | bayes_pls_golite062009 |
| hydrolase activity | 1.18773479836745 | bayes_pls_golite062009 |
| mRNA binding | 1.17402119891853 | bayes_pls_golite062009 |
| ligase activity | 1.06979791212194 | bayes_pls_golite062009 |
| nucleic acid binding | 1.05662964529454 | bayes_pls_golite062009 |
| transcription termination factor activity | 1.01993495617192 | bayes_pls_golite062009 |
| binding | 0.907487229190259 | bayes_pls_golite062009 |
| catalytic activity | 0.878454819018611 | bayes_pls_golite062009 |
| DNA binding | 0.828609700556836 | bayes_pls_golite062009 |
| nuclease activity | 0.69721312877891 | bayes_pls_golite062009 |
| ATP-dependent peptidase activity | 0.66778558090199 | bayes_pls_golite062009 |
| carbohydrate kinase activity | 0.51810239718467 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.504302440847948 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.477960254167 | bayes_pls_golite062009 |
| tRNA-specific ribonuclease activity | 0.383567539949931 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.348601923227652 | bayes_pls_golite062009 |
| transcription factor activity | 0.298729064067577 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.0740938021136293 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.0740938021136293 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0287026367466632 | bayes_pls_golite062009 |
