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Protein Overview: gi|50897176, gi|...

General Information:
Name(s) found: gi|53828619 [NCBI NR]
gi|50897176 [NCBI NR]
gi|30682569 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|53828619|gb|AAU94419.1| At5g08780 [Arabidopsis thaliana] [NCBI NR]
  • gi|50897176|gb|AAT85727.1| At5g08780 [Arabidopsis thaliana] [NCBI NR]
  • gi|30682569|ref|NP_680160.2| histone H1/H5 family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 457 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    nucleosome [IEA][ISS]
    Biological Process: nucleosome assembly [IEA][ISS]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASATLMSM AHERKVENLR GFMVNLANSR DFSLPETKLF QQKFLDLCLS RTPDHPTYSA  60
   61 MIFIAIMDLN KEGGASEDAI SEFIKSKYKN LPFAHTNLLS HHLAKLVEKR EILCDCNNDC 120
  121 YSLPGEKKTV ASTDVQRKSD LITVRTNDQR AADEVMTCQN KEESVEILKS GDPKVVLLEE 180
  181 QSLTKSRTGS KRKACCVINV IEVMDTEDNG FKAGLRDSTV QIPRKEGVVE VVDVENSENE 240
  241 ARIEANSRGG ELYEVAVLYK QNDVLMEESG KEAMETSSIV RKAKLRRTSN TTKENVEVTS 300
  301 EAYKKLWECQ TEACSNIIAL EKMLKQCKEK DQQNKAVSEI DDVSRLPLSM ESCRELWKAA 360
  361 QKLQSQLSEI IDSCDETVVP YSVSPGCELE GISKGLCKED PKMKTPRGNN GSEKPSTQLE 420
  421 QKEREKSSKK KPQVKKTRIK SLRDIGITAV RKSPRFS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] PSI-BLAST 6.09691 Histone H5, globular domain
    2 View Details [140..457] MSA 4.209994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle