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Protein Overview: TGH_ARATH

General Information:
Name(s) found: TGH_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30793925|gb|AAP40415.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30688799|ref|NP_197699.2| TGH (TOUGH); RNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|26451308|dbj|BAC42755.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • G patch domain-containing protein TGH OS=Arabidopsis thaliana GN=TGH PE=2 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|26451308|dbj|BAC42755.1| unknown protein [Arabidopsis thaliana]gi|30688799|ref|NP_197699.2| SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: TGH | TGH (TOUGH); RNA binding | chr5:7743229-7748892 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: TGH | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | chr5:7743226-7748889 REVERSE LENGTH=930 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • G patch domain-containing protein 1 OS=Arabidopsis thaliana GN=At5g23080/MYJ24_7 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 930 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: [NOT]auxin polar transport [IMP]
    phloem or xylem histogenesis [IMP]
    RNA processing [ISS][TAS]
    [NOT]auxin mediated signaling pathway [IMP]
    Molecular Function: RNA binding [ISS][TAS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT  60
   61 GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF LDEDEKADME GKSLSASSQF 120
  121 DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE 180
  181 VRASSDARRE ARKAFLAFYT DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ 240
  241 DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE 300
  301 ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER 360
  361 FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN NLKLLIEGFA TFVSRCGKLY 420
  421 EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET 480
  481 RGSLLGEKPL QRSLKETDTS ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ 540
  541 ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ 600
  601 PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK 660
  661 LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS IEEPEVEVEV ENVERPVDLY 720
  721 KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE 780
  781 IKSRSKPEDS SDKRLDRPGL KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS 840
  841 ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK 900
  901 HRRTKKSSSS RYSSDEEQKE SRREKKRRRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..126] Pfam 52.657577 No description for PF07713.5 was found. No confident structure predictions are available.
    2 View Details [127..330] deduced N/A No confident structure predictions are available.
    3 View Details [331..492] deduced N/A No confident structure predictions are available.
    4 View Details [493..670] deduced N/A No confident structure predictions are available.
    5 View Details [671..837] deduced N/A No confident structure predictions are available.
    6 View Details [838..930] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle