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Protein Overview: EG10976

General Information:
Name(s) found: ssb / EG10976 [EcoGene]
Description(s) found:
Found 6 descriptions.
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  • single-stranded DNA-binding protein / Single-stranded DNA-binding protein; alkali-inducible; homotetramer [EcoGene]
    • Organism: Escherichia coli str. K-12 substr. MG1655
    Length: 178 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA replication [IEA]
    recombinational repair [TASLink to PubMed article]
    DNA recombination [TASLink to PubMed article]
    mismatch repair [TASLink to PubMed article]
    SOS response [TASLink to PubMed article]
    Molecular Function: single-stranded DNA binding [IDALink to PubMed article][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRGVNKVI LVGNLGQDPE VRYMPNGGAV ANITLATSES WRDKATGEMK EQTEWHRVVL  60
   61 FGKLAEVASE YLRKGSQVYI EGQLRTRKWT DQSGQDRYTT EVVVNVGGTM QMLGGRQGGG 120
  121 APAGGNIGGG QPQGGWGQPQ QPQGGNQFSG GAQSRPQQSA PAAPSNEPPM DFDDDIPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] PSI-BLAST 55.154902 SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  1.65948797337693 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.38758756313423 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.30327082958682 bayes_pls_golite062009
  • binding
    		•  0.902189695502298 bayes_pls_golite062009
  • DNA binding
    		•  0.9001707539121 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0989196136046104 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle