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Protein Overview: gi|13624754, gi|...

General Information:
Name(s) found: gi|19114900 [NCBI NR]
gi|13624754 [NCBI NR]
Description(s) found:
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  • ref|NP_593988.1| putative transcriptional regulator; contains Zn_clus domain [Schizosaccharomyces pombe] [NCBI NR]
  • gi|13624754|emb|CAC36909.1| SPAPB24D3.01 [Schizosaccharomyces pombe] [NCBI NR]
  • putative transcriptional regulator; contains Zn_clus domain [Schizosaccharomyces pombe]gi|13624754|emb|CAC36909.1| SPAPB2C8.02 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • SPAPB24D3.01 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 570 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVEKASKA CELCRRKKIR CNRELPSCQN CIVYQEECHY SKRLKRSYSA TKKKNGNPVL  60
   61 ESAIPSLSPS PSIENGSAML NSDITSLSNR IFKVEEKLDL ILSLLKNSSE PLDRTERKDF 120
  121 PSLAMQIRDA NSLVNTKLKE YSRRFELPSQ KTSFDDLFSS TFPNFDAAFK DIPDKEWAFE 180
  181 NVQWYFRYIN CWWPVFYEKD FMDEYECLYR DRNQVKGAWL VSFYSVLALA ASRSKAGKDQ 240
  241 KLAESFFSTS WYLIQKPGFF LTPQLEKIQA LLIMIQFAAH VSLHTLCKAL CGQACLMIRD 300
  301 LNLHRESANA DFSNKDAELR RRVFWICYIF EITTSLVFGT PSVLSDMDID CEHPNYEYGR 360
  361 YFSEMPTGDL IFSSEVSLTI LKNEVRTKVY SRTNTSNARN REKAIWQIHE KLLCWERALP 420
  421 IELRQYFIAL TENAQIYEEL DFEKQRLFSA CIEVYLSYCN TLIFLHRLNE SVEGANICLD 480
  481 TARRAINVLK FFFIIPIAKN VCYLWVFLYC PFTPFLVLFS NIVNGKEPST DIAFEDLNRM 540
  541 YSVNRFFVKL RDIGGDLAEK LASVTENFIH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] PSI-BLAST 4.69897 Gal4; CD2-Gal4
    2 View Details [128..190] deduced N/A No confident structure predictions are available.
    3 View Details [191..366] Pfam 32.619789 No description for PF04082.9 was found. Confident ab initio structure predictions are available.
    4 View Details [367..570] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.56444258780502 bayes_pls_golite062009
  • DNA binding
    		•  4.26146437716972 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.17369933547911 bayes_pls_golite062009
  • transcription factor activity
    		•  3.049435548132 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.93914501897006 bayes_pls_golite062009
  • binding
    		•  2.91929847152301 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  2.44382866473054 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.87955444697212 bayes_pls_golite062009
  • transcription activator activity
    		•  0.915626626047549 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.58

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle