| Protein: | gi|13624754, gi|... |
| Organism: | Schizosaccharomyces pombe |
| Length: | 570 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13624754, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
270.0 | [0..1] | [570..1] |
|
|
247.0 | [0..3] | [568..63] |
|
|
243.0 | [0..3] | [568..62] |
|
|
234.0 | [0..3] | [568..63] |
|
|
232.0 | [0..3] | [568..61] |
|
|
214.0 | [0..3] | [567..48] |
|
|
214.0 | [0..1] | [568..54] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MTSVEKASKA CELCRRKKIR CNRELPSCQN CIVYQEECHY SKRLKRSYSA TKKKNGNPVL 60
61 ESAIPSLSPS PSIENGSAML NSDITSLSNR IFKVEEKLDL ILSLLKNSSE PLDRTERKDF 120
121 PSLAMQI
|
| Detection Method: |  |
| Confidence: | 4.69897 |
| Match: | 1d66A |
| Description: | Gal4; CD2-Gal4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [128-190] |
1 11 21 31 41 51
| | | | | |
1 RDANSLVNTK LKEYSRRFEL PSQKTSFDDL FSSTFPNFDA AFKDIPDKEW AFENVQWYFR 60
61 YIN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [191-366] |
1 11 21 31 41 51
| | | | | |
1 CWWPVFYEKD FMDEYECLYR DRNQVKGAWL VSFYSVLALA ASRSKAGKDQ KLAESFFSTS 60
61 WYLIQKPGFF LTPQLEKIQA LLIMIQFAAH VSLHTLCKAL CGQACLMIRD LNLHRESANA 120
121 DFSNKDAELR RRVFWICYIF EITTSLVFGT PSVLSDMDID CEHPNYEYGR YFSEMP
|
| Detection Method: | |
| Confidence: | 32.619789 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.816 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
|
Region A: Residues: [367-570] |
1 11 21 31 41 51
| | | | | |
1 TGDLIFSSEV SLTILKNEVR TKVYSRTNTS NARNREKAIW QIHEKLLCWE RALPIELRQY 60
61 FIALTENAQI YEELDFEKQR LFSACIEVYL SYCNTLIFLH RLNESVEGAN ICLDTARRAI 120
121 NVLKFFFIIP IAKNVCYLWV FLYCPFTPFL VLFSNIVNGK EPSTDIAFED LNRMYSVNRF 180
181 FVKLRDIGGD LAEKLASVTE NFIH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.951 | a.24.14 | FAT domain of focal adhesion kinase |
