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Protein Overview: SLK2_ARATH

General Information:
Name(s) found: SLK2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30697623|ref|NP_851245.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|23297578|gb|AAN12899.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15241694|ref|NP_201015.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14532714|gb|AAK64158.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana GN=SLK2 PE=1 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|14532714|gb|AAK64158.1| unknown protein [Arabidopsis thaliana]gi|30697623|ref|NP_851245.1| expressed protein [Arabidopsis thaliana]gi|15241694|ref|NP_201015.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to SLK1 (SEUSS-LIKE 1), transcription regulator [Arabidopsis thaliana] (TAIR:AT4G25520.1); similar to SEU1 protein [Antirrhinum majus] (GB:CAF18247.1) | chr5:24952447-24955766 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540 REVERSE LENGTH=816 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Protein SEUSS-like 2 OS=Arabidopsis thaliana GN=SLK2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 816 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: embryonic development [IMP]
    gynoecium development [IMP]
    ovule development [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM  60
   61 MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES YMRLPASPMS FSSNNISISG 120
  121 SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK 180
  181 PRLDSKQDDA LQQQILRQWL QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL 240
  241 PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL 300
  301 YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC 360
  361 GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER RYGSGIMVLE YGKAVQESVY 420
  421 EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ 480
  481 SGSDGIHQQD LQANSNMVMA AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI 540
  541 DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI 600
  601 PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG 660
  661 TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH QQPPSCSSGN QTLEQQMIHQ 720
  721 IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ 780
  781 SQNLEGIISN TSLNFGNNGV FSNEVDESMG GYSWKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] deduced N/A No confident structure predictions are available.
    2 View Details [108..306] PSI-BLAST 4.69897 Sec24
    3 View Details [307..519] deduced N/A No confident structure predictions are available.
    4 View Details [520..693] deduced N/A No confident structure predictions are available.
    5 View Details [694..816] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle