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Protein Overview: gi|30687794, gi|...

General Information:
Name(s) found: gi|30687794 [NCBI NR]
gi|26450440 [NCBI NR]
gi|21617894 [NCBI NR]
Description(s) found:
Found 12 descriptions.
SHOW ALL
  • gi|30687794|ref|NP_181447.2| SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21617894|gb|AAM66944.1| unknown [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 410 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    amyloplast [TAS]
    Biological Process: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) [IMP]
    maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) [IMP]
    plastid translation [IMP]
    Molecular Function: RNA binding [ISS]
    pseudouridine synthase activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVAASSSI SFAASFLKIK AFPLSPRFFP IRTLRCSVSS SSSEPIEFDI SFAPPKPKPS  60
   61 STHGGVTPQQ LFIPWIVRSD DGTLKLQSQP PARLIHNLAI DATTQNPKKK DKSKKKQPQA 120
  121 TSSSSATTTA SSPASHSEVK PKLSKAARRF YNENFKEQPQ RLSKVLAAAG VASRRTSEEL 180
  181 IFDGKVTVNG ILCNTPQTRV DPSRDIIYVN GNRIPKKLPP KVYFALNKPK GYICSSGEKE 240
  241 IKSAISLFDE YLSSWDKRNP GTPKPRLFTV GRLDVATTGL IVVTNDGDFA QKLSHPSSSL 300
  301 PKEYITTVVG DIHKRHLMAI SEGTMVEGVH CVPDSVELMP KQHDIPRARL RIVVHEGRNH 360
  361 EVRELVKNAG LEVHSLKRVR IGGFRLPSDL GLGKHVELKQ SELKALGWKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..72] deduced N/A No confident structure predictions are available.
    2 View Details [73..157] PSI-BLAST 3.09691 No description for 2uu9D was found.
    3 View Details [158..410] PSI-BLAST 51.154902 Crystal structure of pseudouridylate synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.93805098366683 bayes_pls_golite062009
  • structural molecule activity
    		•  1.65902435754631 bayes_pls_golite062009
  • RNA binding
    		•  0.351909066993469 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle