YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30687794, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVAASSSI SFAASFLKIK AFPLSPRFFP IRTLRCSVSS SSSEPIEFDI SFAPPKPKPS  60
   61 STHGGVTPQQ LFIPWIVRSD DGTLKLQSQP PARLIHNLAI DATTQNPKKK DKSKKKQPQA 120
  121 TSSSSATTTA SSPASHSEVK PKLSKAARRF YNENFKEQPQ RLSKVLAAAG VASRRTSEEL 180
  181 IFDGKVTVNG ILCNTPQTRV DPSRDIIYVN GNRIPKKLPP KVYFALNKPK GYICSSGEKE 240
  241 IKSAISLFDE YLSSWDKRNP GTPKPRLFTV GRLDVATTGL IVVTNDGDFA QKLSHPSSSL 300
  301 PKEYITTVVG DIHKRHLMAI SEGTMVEGVH CVPDSVELMP KQHDIPRARL RIVVHEGRNH 360
  361 EVRELVKNAG LEVHSLKRVR IGGFRLPSDL GLGKHVELKQ SELKALGWKN

Type	Start	End	Confidence
Signal Peptide	1	21	0.70
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	410	0.99