| Protein: | gi|30687794, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 410 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30687794, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
243.0 | [0..157] | [381..15] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MASVAASSSI SFAASFLKIK AFPLSPRFFP IRTLRCSVSS SSSEPIEFDI SFAPPKPKPS 60
61 STHGGVTPQQ LF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [73-157] |
1 11 21 31 41 51
| | | | | |
1 IPWIVRSDDG TLKLQSQPPA RLIHNLAIDA TTQNPKKKDK SKKKQPQATS SSSATTTASS 60
61 PASHSEVKPK LSKAARRFYN ENFKE
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 2uu9D |
| Description: | No description for 2uu9D was found. |
|
Region A: Residues: [158-410] |
1 11 21 31 41 51
| | | | | |
1 QPQRLSKVLA AAGVASRRTS EELIFDGKVT VNGILCNTPQ TRVDPSRDII YVNGNRIPKK 60
61 LPPKVYFALN KPKGYICSSG EKEIKSAISL FDEYLSSWDK RNPGTPKPRL FTVGRLDVAT 120
121 TGLIVVTNDG DFAQKLSHPS SSLPKEYITT VVGDIHKRHL MAISEGTMVE GVHCVPDSVE 180
181 LMPKQHDIPR ARLRIVVHEG RNHEVRELVK NAGLEVHSLK RVRIGGFRLP SDLGLGKHVE 240
241 LKQSELKALG WKN
|
| Detection Method: | |
| Confidence: | 51.154902 |
| Match: | 1vioA |
| Description: | Crystal structure of pseudouridylate synthase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| pseudouridine synthase activity | 5.60483019625575 | bayes_pls_golite062009 |
| intramolecular transferase activity | 4.62815459483632 | bayes_pls_golite062009 |
| isomerase activity | 3.43067391737824 | bayes_pls_golite062009 |
| catalytic activity | 2.39224964671205 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.93805098366683 | bayes_pls_golite062009 |
| structural molecule activity | 1.65902435754631 | bayes_pls_golite062009 |
| RNA binding | 0.351909066993469 | bayes_pls_golite062009 |
