YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30687794, gi|...
Organism: Arabidopsis thaliana
Length: 410 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30687794, gi|....

Description E-value Query
Range
Subject
Range
gi|20807974, gi|... - gi|20807974|ref|NP_623145.1| pseudouridylate synthase, 23S RNA-specific [Thermoanaerobacter tengcong...
gi|20807974 - gi|20807974|ref|NP_623145.1| Pseudouridylate synthase, 23S RNA-specific [Thermoanaerobacter tengcong...
243.0 [0..157] [381..15]

Back

Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVAASSSI SFAASFLKIK AFPLSPRFFP IRTLRCSVSS SSSEPIEFDI SFAPPKPKPS  60
   61 STHGGVTPQQ LF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPWIVRSDDG TLKLQSQPPA RLIHNLAIDA TTQNPKKKDK SKKKQPQATS SSSATTTASS  60
   61 PASHSEVKPK LSKAARRFYN ENFKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.09691
Match: 2uu9D
Description: No description for 2uu9D was found.

Predicted Domain #3
Region A:
Residues: [158-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPQRLSKVLA AAGVASRRTS EELIFDGKVT VNGILCNTPQ TRVDPSRDII YVNGNRIPKK  60
   61 LPPKVYFALN KPKGYICSSG EKEIKSAISL FDEYLSSWDK RNPGTPKPRL FTVGRLDVAT 120
  121 TGLIVVTNDG DFAQKLSHPS SSLPKEYITT VVGDIHKRHL MAISEGTMVE GVHCVPDSVE 180
  181 LMPKQHDIPR ARLRIVVHEG RNHEVRELVK NAGLEVHSLK RVRIGGFRLP SDLGLGKHVE 240
  241 LKQSELKALG WKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.154902
Match: 1vioA
Description: Crystal structure of pseudouridylate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
pseudouridine synthase activity 5.60483019625575 bayes_pls_golite062009
intramolecular transferase activity 4.62815459483632 bayes_pls_golite062009
isomerase activity 3.43067391737824 bayes_pls_golite062009
catalytic activity 2.39224964671205 bayes_pls_golite062009
structural constituent of ribosome 1.93805098366683 bayes_pls_golite062009
structural molecule activity 1.65902435754631 bayes_pls_golite062009
RNA binding 0.351909066993469 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle