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Protein Overview: gi|21593535, gi|...

General Information:
Name(s) found: gi|90186238 [NCBI NR]
gi|21593535 [NCBI NR]
gi|195971099 [NCBI NR]
gi|18400624 [NCBI NR]
gi|110737668 [NCBI NR]
Description(s) found:
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  • gi|90186238|gb|ABD91495.1| At3g15080 [Arabidopsis thaliana] [NCBI NR]
  • gi|21593535|gb|AAM65502.1| exonuclease, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|195971099|gb|ACG60894.1| exonuclease domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18400624|ref|NP_566499.1| exonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110737668|dbj|BAF00773.1| putative exonuclease [Arabidopsis thaliana] [NCBI NR]
  • exonuclease, putative [Arabidopsis thaliana]gi|18400624|ref|NP_566499.1| exonuclease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Exonuclease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | exonuclease family protein | chr3:5074326-5076334 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • exonuclease, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g15080 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • exonuclease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative exonuclease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5074319-5076327 FORWARD LENGTH=275 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g15080 OS=Arabidopsis thaliana GN=At3g15080 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 275 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    exonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDLKRKPK KKITPKPVQL NPNWSLLQQK LKSDSHGNTR KSSNPENPSS ILGKRKERPD  60
   61 SEVDVPKINP LAPVNDDSSL TDEVAMDCEM VGVSQGTKSA LGRVTLVNKW GNVLYDEFVR 120
  121 PVEHVVDFRT SISGIRPRDL RKAKDFRVAQ TKVAELIKGK ILVGHALHND LKALLLTHPK 180
  181 KDIRDTGEYQ PFLKGKTRKS LKHLASEILG ADIQNGEHCP IDDARAAMML YQKNRKEWEK 240
  241 TVKDQTRMWL KQKKRKPKKK AKYGNNASTN DNPIV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..275] PSI-BLAST 32.69897 human ISG20

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  5.30591758406946 bayes_pls_golite062009
  • exoribonuclease activity
    		•  3.71639182685131 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  3.59362615133405 bayes_pls_golite062009
  • exonuclease activity
    		•  3.13676176369406 bayes_pls_golite062009
  • nuclease activity
    		•  3.11657409772275 bayes_pls_golite062009
  • ribonuclease H activity
    		•  2.91966688044755 bayes_pls_golite062009
  • single-stranded DNA specific 3'-5' exodeoxyribonuclease activity
    		•  2.75003136922541 bayes_pls_golite062009
  • endonuclease activity
    		•  2.63074055051349 bayes_pls_golite062009
  • endoribonuclease activity
    		•  2.59247838057313 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.57498413015114 bayes_pls_golite062009
  • hydrolase activity
    		•  2.41899414621161 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  2.12039058720352 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  2.04408785855894 bayes_pls_golite062009
    		• 2.02108278477989 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.74431545836806 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.59628511603826 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.44123900197846 bayes_pls_golite062009
  • catalytic activity
    		•  1.25233849524628 bayes_pls_golite062009
  • protein binding
    		•  1.16870279238939 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.1219517187744 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.10433412699603 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.04079362397031 bayes_pls_golite062009
  • DNA binding
    		•  0.860359347662869 bayes_pls_golite062009
  • binding
    		•  0.762139256580538 bayes_pls_golite062009
  • RNA binding
    		•  0.750194803368593 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.717600245625866 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.568273228950698 bayes_pls_golite062009
  • transcription factor activity
    		•  0.332903382446869 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  0.278838342302102 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.261428436029202 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.0701825322473915 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.00214157813118243 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle