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Protein Overview: gi|23198298, gi|...

General Information:
Name(s) found: gi|23198298 [NCBI NR]
gi|22328262 [NCBI NR]
gi|20466538 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|23198298|gb|AAN15676.1| putative WD-repeat protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22328262|ref|NP_192211.2| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20466538|gb|AAM20586.1| putative WD-repeat protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 493 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT  60
   61 KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR FSAADCCHML SRYLPTKGPW 120
  121 LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS 180
  181 PDQRNLVYAS MSPIVHIVDV GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD 240
  241 GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD 300
  301 RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV 360
  361 LRNYEWDYRW MDYPTEARDL KHPLDQSVST YKGHSVLRTL IRCYFSPAHS TGQKYIYTGS 420
  421 NDSSVYIYDL VSGDKVAVLK HHSSPVRDCN WHPYYPTLIS SSWDGDLVKW EFPGSGEAPI 480
  481 MSKKRVRRRH FYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..385] PSI-BLAST 23.69897 Arp2/3 complex 41 kDa subunit ARPC1
    2 View Details [386..493] FFAS03 4.23 No description for 2gnqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 3.71730993724596 bayes_pls_golite062009
  • RNA binding
    		•  2.1927334052131 bayes_pls_golite062009
  • binding
    		•  1.83286470399158 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  1.29381240188821 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25687092973217 bayes_pls_golite062009
  • protein binding
    		•  1.24173112731149 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20712373307552 bayes_pls_golite062009
  • snoRNA binding
    		•  1.1873470464264 bayes_pls_golite062009
  • DNA binding
    		•  0.711274653406079 bayes_pls_golite062009
  • transcription factor activity
    		•  0.243992994917491 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle