| Protein: | gi|23198298, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 493 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23198298, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
563.0 | [0..7] | [493..1251] |
|
Region A: Residues: [1-385] |
1 11 21 31 41 51
| | | | | |
1 MFFGPSEFDA DEMGYAMSRL EIESDLCDTG KDVCGVGSSS GSHRSSEHLA DLDHEISQVT 60
61 KLKSSPHQRY SREVPGRHQL PVSTVRMLAG RESNFSGRGR FSAADCCHML SRYLPTKGPW 120
121 LVDQMDSRAY VSQFSTDGSL FIAGFQGSRI RIYNVEKGWK VQKDILAKSL RWTVTDTSLS 180
181 PDQRNLVYAS MSPIVHIVDV GSGSTESHAN VTEIHDGLDF SSDEDGGYSF GIFSVKFSTD 240
241 GREVVAGSSD DSIYVYDLEA NRVSLRTVAH TSDVNTVCFA DESGNLILSG SDDNLCKVWD 300
301 RRCFIGRDKP AGVLVGHLEG VTFIDSRGDG RYFISNGKDQ TIKLWDIRKM SSSAPARHEV 360
361 LRNYEWDYRW MDYPTEARDL KHPLD
|
| Detection Method: |  |
| Confidence: | 23.69897 |
| Match: | 1k8kC |
| Description: | Arp2/3 complex 41 kDa subunit ARPC1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 3.71730993724596 | bayes_pls_golite062009 | |
| RNA binding | 2.1927334052131 | bayes_pls_golite062009 |
| binding | 1.83286470399158 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 1.29381240188821 | bayes_pls_golite062009 |
| transcription regulator activity | 1.25687092973217 | bayes_pls_golite062009 |
| protein binding | 1.24173112731149 | bayes_pls_golite062009 |
| nucleic acid binding | 1.20712373307552 | bayes_pls_golite062009 |
| snoRNA binding | 1.1873470464264 | bayes_pls_golite062009 |
| DNA binding | 0.711274653406079 | bayes_pls_golite062009 |
| transcription factor activity | 0.243992994917491 | bayes_pls_golite062009 |
|
Region A: Residues: [386-493] |
1 11 21 31 41 51
| | | | | |
1 QSVSTYKGHS VLRTLIRCYF SPAHSTGQKY IYTGSNDSSV YIYDLVSGDK VAVLKHHSSP 60
61 VRDCNWHPYY PTLISSSWDG DLVKWEFPGS GEAPIMSKKR VRRRHFYY
|
| Detection Method: | |
| Confidence: | 4.23 |
| Match: | 2gnqA |
| Description: | No description for 2gnqA was found. |
