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Protein Overview: TYW1_ARATH

General Information:
Name(s) found: TYW1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75158883|sp|Q8RXN5.1|TYW1_ARATH RecName: Full=tRNA wybutosine-synthesizing protein 1 homolog [NCBI NR]
  • gi|22330642|ref|NP_177656.2| flavodoxin family protein / radical SAM domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21281261|gb|AAM45053.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|19423975|gb|AAL87267.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|19423975|gb|AAL87267.1| unknown protein [Arabidopsis thaliana]gi|22330642|ref|NP_177656.2| flavodoxin family protein / radical SAM domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | flavodoxin family protein / radical SAM domain-containing protein | chr1:28224510-28227258 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • FMN binding / catalytic/ electron transporter/ iron ion binding / oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | flavodoxin family protein / radical SAM domain-containing protein | chr1:28220849-28223597 REVERSE LENGTH=647 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • tRNA wybutosine-synthesizing protein 1 homolog OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 647 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: FMN binding [IEA]
    iron ion binding [IEA]
    catalytic activity [IEA]
    oxidoreductase activity [IEA][ISS]
    electron carrier activity [IEA]
    iron-sulfur cluster binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTSSVRVR LAFVALLSAT TFYCIHKYRR LKHLKNLSLN PSSTLKASRG KIFFISQTGT  60
   61 AKALAQRLHE LCASNDIAFD IVDPHSYEPE DLPKETLVLF IASTWDGGKP PKNGEFLVNW 120
  121 LGESAEDFRV GSLLLSDCKF AVFGVGSRAY GESYNAVAKE LSSRMIGLGG LEMIPVGEGD 180
  181 VDDGELDRAF QDWCDGVIRV LKGGSAQETN GVSQQIGAVE DDLEYYDSTD EEDEDNDADG 240
  241 GIVDLEDIAG KAPSKRNGVV KVTKVDGKKE MVTPVIRASL TKQGYKIIGS HSGVKICRWT 300
  301 KSQLRGRGGC YKHSFYGIES HRCMETTPSL ACANKCVFCW RHHTNPVGKS WQWKMDEPSV 360
  361 IVKGALDLHK NMIKQMKGVP GVTPEKLQEG LNPRHCALSL VGEPIMYPEI NALVDELHGR 420
  421 RISTFLVTNA QFPEKILMMK PITQLYVSVD AATKESLKAI DRPLFADFWE RFIDSLKALQ 480
  481 EKQQRTVYRL TLVKGWNTEE LDAYFNLFSI GKPDFIEIKG VTYCGSSATS KLTMENVPWH 540
  541 TDVKAFSEAL SLKSNGEYEV ACEHAHSCCV LLGRTEKFKV DGKWFTWIDY EKFHDLVASG 600
  601 EPFTSTDYMA QTPSWAVYGA QEGGFDPGQL RYKKERNHPP KPQAVLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..647] PSI-BLAST 58.221849 NADPH-cytochrome p450 reductase; NADPH-cytochrome p450 reductase, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.45374095556065 bayes_pls_golite062009
  • transferase activity
    		•  1.15480450573972 bayes_pls_golite062009
  • binding
    		•  0.73972626785558 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.62629924591908 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.003773319796959 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle