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Protein Overview: gi|17104577, gi|...

General Information:
Name(s) found: gi|18405469 [NCBI NR]
gi|17104577 [NCBI NR]
gi|14334988 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|18405469|ref|NP_566822.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17104577|gb|AAL34177.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14334988|gb|AAK59671.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 535 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDHTAQKIQ YPAGFRDSPM ESSRSRSVFV NIGLRELNGF RVRKRPFFAD SELICREIAG  60
   61 VAVEHDGIWT PPLAVSFCKT SRNSQLFAVS DEDGHVSLFN SSSKKFASSA THQENTEKAR 120
  121 FRDWIAHYNA IFDISWIKGD SCLLTASGDQ TIKVWDVEEN KCTGVLIGHT GTVKSMCSHP 180
  181 TNSDLLVSGS RDGCFALWDL RCKSSSHKEE FCINSTGMVK GAHLSPLSKR IRRRKAASSS 240
  241 ITSVLYVKDE ITIATAGAPD SALKFWDIRK LKAPFAQASP QSDPTNTKEK RSHGIVSLSQ 300
  301 DSSGTYLTAS CKDNRIYLYN TLRLDKGPVQ SFSGCRIDSF FVRTMISPDG EYVLSGSSDG 360
  361 NAYIWQVNKP QVDPIILKGH DFEVTAVDWS PSEIGKVATA SDDFTVRLWN IENNICTNAN 420
  421 ATASVSRVKR RVTALSNTEA KERLEMNRET ESPQKHSSLS SDDDYNNDQS MPIIRTPESQ 480
  481 KKKTSSSSSL SSLSSEEDII CERTPETTFN SPSSVLNPPS SVKRRTIRDY FLVTP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..535] PSI-BLAST 45.522879 Actin interacting protein 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone methyltransferase activity (H3-K4 specific)
    		•  4.71992275913384 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.25521258308263 bayes_pls_golite062009
  • binding
    		•  2.2778252170547 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.85632145559025 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.35170368882651 bayes_pls_golite062009
  • protein binding
    		•  1.24173112731149 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.693814013902061 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.359536347486199 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.190100099674138 bayes_pls_golite062009
  • chromatin binding
    		•  0.145491963066342 bayes_pls_golite062009
    		• 0.0248988265652406 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.00335766408304172 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle