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View Structure Prediction Details

Protein: gi|17104577, gi|...
Organism: Arabidopsis thaliana
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17104577, gi|....

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
519.0 [0..1] [534..1168]

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Predicted Domain #1
Region A:
Residues: [1-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDHTAQKIQ YPAGFRDSPM ESSRSRSVFV NIGLRELNGF RVRKRPFFAD SELICREIAG  60
   61 VAVEHDGIWT PPLAVSFCKT SRNSQLFAVS DEDGHVSLFN SSSKKFASSA THQENTEKAR 120
  121 FRDWIAHYNA IFDISWIKGD SCLLTASGDQ TIKVWDVEEN KCTGVLIGHT GTVKSMCSHP 180
  181 TNSDLLVSGS RDGCFALWDL RCKSSSHKEE FCINSTGMVK GAHLSPLSKR IRRRKAASSS 240
  241 ITSVLYVKDE ITIATAGAPD SALKFWDIRK LKAPFAQASP QSDPTNTKEK RSHGIVSLSQ 300
  301 DSSGTYLTAS CKDNRIYLYN TLRLDKGPVQ SFSGCRIDSF FVRTMISPDG EYVLSGSSDG 360
  361 NAYIWQVNKP QVDPIILKGH DFEVTAVDWS PSEIGKVATA SDDFTVRLWN IENNICTNAN 420
  421 ATASVSRVKR RVTALSNTEA KERLEMNRET ESPQKHSSLS SDDDYNNDQS MPIIRTPESQ 480
  481 KKKTSSSSSL SSLSSEEDII CERTPETTFN SPSSVLNPPS SVKRRTIRDY FLVTP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 1nr0A
Description: Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
histone methyltransferase activity (H3-K4 specific) 4.71992275913384 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 3.25521258308263 bayes_pls_golite062009
binding 2.2778252170547 bayes_pls_golite062009
histone methyltransferase activity 1.85632145559025 bayes_pls_golite062009
protein methyltransferase activity 1.35170368882651 bayes_pls_golite062009
protein binding 1.24173112731149 bayes_pls_golite062009
lysine N-methyltransferase activity 1.15313682561559 bayes_pls_golite062009
protein-lysine N-methyltransferase activity 1.15313682561559 bayes_pls_golite062009
histone-lysine N-methyltransferase activity 1.15313682561559 bayes_pls_golite062009
nucleic acid binding 0.693814013902061 bayes_pls_golite062009
histone binding 0.685319917508843 bayes_pls_golite062009
cytoskeletal protein binding 0.359536347486199 bayes_pls_golite062009
protein kinase activity 0.229242350006544 bayes_pls_golite062009
transcription regulator activity 0.190100099674138 bayes_pls_golite062009
chromatin binding 0.145491963066342 bayes_pls_golite062009
0.0248988265652406 bayes_pls_golite062009
N-methyltransferase activity 0.00335766408304172 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle