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Protein Overview: CSP3_ARATH

General Information:
Name(s) found: CSP3_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEP]
    cytoplasm [IEP]
    Biological Process: response to cold [IMP]
    DNA duplex unwinding [IDA]
    Molecular Function: nucleic acid binding [IEA][ISS]
    DNA binding [IEA]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMEDQSAAR SIGKVSWFSD GKGYGFITPD DGGEELFVHQ SSIVSDGFRS LTLGESVEYE  60
   61 IALGSDGKTK AIEVTAPGGG SLNKKENSSR GSGGNCFNCG EVGHMAKDCD GGSGGKSFGG 120
  121 GGGRRSGGEG ECYMCGDVGH FARDCRQSGG GNSGGGGGGG RPCYSCGEVG HLAKDCRGGS 180
  181 GGNRYGGGGG RGSGGDGCYM CGGVGHFARD CRQNGGGNVG GGGSTCYTCG GVGHIAKVCT 240
  241 SKIPSGGGGG GRACYECGGT GHLARDCDRR GSGSSGGGGG SNKCFICGKE GHFARECTSV 300
  301 A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] PSI-BLAST 19.522879 CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
    2 View Details [79..169] FFAS03 2.06 No description for 2ihxA was found.
    3 View Details [170..233] PSI-BLAST 7.0 NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1
    4 View Details [234..301] FFAS03 2.19 No description for 2ihxA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.67999218416128 bayes_pls_golite062009
  • DNA binding
    		•  2.0554473444871 bayes_pls_golite062009
  • binding
    		•  1.49502978097244 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.537716356194117 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0989196136046104 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle