| Protein: | CSP3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 301 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSP3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
188.0 | [0..3] | [301..1] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MAMEDQSAAR SIGKVSWFSD GKGYGFITPD DGGEELFVHQ SSIVSDGFRS LTLGESVEYE 60
61 IALGSDGKTK AIEVTAPG
|
| Detection Method: |  |
| Confidence: | 19.522879 |
| Match: | 1mjcA |
| Description: | CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.67999218416128 | bayes_pls_golite062009 |
| DNA binding | 2.0554473444871 | bayes_pls_golite062009 |
| binding | 1.49502978097244 | bayes_pls_golite062009 |
| transcription regulator activity | 0.537716356194117 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.0989196136046104 | bayes_pls_golite062009 |
|
Region A: Residues: [79-169] |
1 11 21 31 41 51
| | | | | |
1 GGSLNKKENS SRGSGGNCFN CGEVGHMAKD CDGGSGGKSF GGGGGRRSGG EGECYMCGDV 60
61 GHFARDCRQS GGGNSGGGGG GGRPCYSCGE V
|
| Detection Method: | |
| Confidence: | 2.06 |
| Match: | 2ihxA |
| Description: | No description for 2ihxA was found. |
|
Region A: Residues: [170-233] |
1 11 21 31 41 51
| | | | | |
1 GHLAKDCRGG SGGNRYGGGG GRGSGGDGCY MCGGVGHFAR DCRQNGGGNV GGGGSTCYTC 60
61 GGVG
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [234-301] |
1 11 21 31 41 51
| | | | | |
1 HIAKVCTSKI PSGGGGGGRA CYECGGTGHL ARDCDRRGSG SSGGGGGSNK CFICGKEGHF 60
61 ARECTSVA
|
| Detection Method: | |
| Confidence: | 2.19 |
| Match: | 2ihxA |
| Description: | No description for 2ihxA was found. |
