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Protein Overview: gi|241879650, gi...

General Information:
Name(s) found: gi|241907919 [NCBI NR]
gi|241879650 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|241907919|ref|ZP_04792493.1| transcriptional regulator, AraC family [Desulfovibrio vulgaris RCH1] [NCBI NR]
  • gi|241879650|gb|EER79103.1| transcriptional regulator, AraC family [Desulfovibrio vulgaris RCH1] [NCBI NR]
    • Organism: Desulfovibrio vulgaris RCH1
    Length: 326 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRADTLHRY ESRVNRLIDH IVNNLSGPLT LEEMAAVSSF SPFHLHRIFS TVMGETLAAF  60
   61 IRRVRIERAA VLLLWNPTRS VTDIAFACGF SSSQNLARAF TRHMGMPPGV YRRCRREEGC 120
  121 GLTPAGAGND DNGKNGNAGG MGLWHGGDAA GASGHHLHLA HSLLERSATM DVRIEEMPRF 180
  181 HVAYLRHVGP YTEATIGPVW GRLMEWAGAR GLLRPGVKTL GVSWDDPEVT PPEHCRYDAC 240
  241 IVIAPGVEVD GGCATQEVGG GLYAVYRRPV ACGQFTEAWN ELFGQWLPTS GMQADDRPCF 300
  301 ELYNDVMQAP PEGPWDVSIC MPVRPL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..326] PSI-BLAST 34.522879 Rob transcription factor, N-terminal domain; Rob transcription factor, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.20079044003198 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.04282979744908 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.993835017049764 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.924960672141413 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.864966310120816 bayes_pls_golite062009
  • DNA binding
    		•  0.709788767352944 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.605733396003465 bayes_pls_golite062009
  • protein binding
    		•  0.57484570028668 bayes_pls_golite062009
  • transcription activator activity
    		•  0.429438163871377 bayes_pls_golite062009
  • transcription factor activity
    		•  0.114745880439629 bayes_pls_golite062009
  • transcription factor binding
    		•  0.109547968922689 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle