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Protein Overview: gi|229898514, gi...

General Information:
Name(s) found: gi|229898514 [NCBI NR]
gi|229688062 [NCBI NR]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • gi|229898514|ref|ZP_04513659.1| phenylalanine tRNA synthetase, beta subunit [Yersinia pestis biovar Orientalis str. India 195] [NCBI NR]
  • gi|229688062|gb|EEO80133.1| phenylalanine tRNA synthetase, beta subunit [Yersinia pestis biovar Orientalis str. India 195] [NCBI NR]
    • Organism: Yersinia pestis biovar Orientalis str. India 195
    Length: 795 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSELWLRE WVNPAISSDD LAHQITMAGL EVDGVDAVAG EFNGVVVGHV VECGQHPNAD  60
   61 KLRVTKIDVG GDRLLDIVCG APNCRQGLKV AVATVGAVLP GDFKIKAAKL RGESSEGMLC 120
  121 SFSELAISDD HDGIIELPAD APIGVDVREY LHLDDKTIEI SVTPNRADCL GIIGVARDVA 180
  181 VVNQLPLTEP DMAEVVASIN DTLPIRVDAP QACPRYLGRV VKGINVKAAT PLWMREKLRR 240
  241 CGIRSIDPVV DVTNFVLLEL GQPMHAFDLD RISGGVIVRL ATDGEELTLL DGTKAKLNAD 300
  301 TLVIADHQKP LAMAGIFGGE HSGVNEETRN VLLESAFFNP LSITGRARRH GLHTDASHRY 360
  361 ERGVDPALQH KAIERATRLL IDICGGEAGP VVDVTTASEL PKQATITLRR EKLDRLIGHH 420
  421 IPSEQVSDIL RRLGCKVTEC GSDWQAVAPS WRFDMAIEED LVEEVARIYG YNNIPDVPVR 480
  481 ADLVMTKHRE ASLSLKRVKT ALVDRGYQEA ITYSFVDPKV QALLHPQQEA LILPNPISVD 540
  541 MSAMRLSLLT GLLSAVVYNQ NRQQSRLRLF ESGLRFVPDN TADLGIRQDV MLAGVIAGHR 600
  601 YDEHWDLARQ PIDFYDLKGD LEAILELTGK LSDVQFRAEA HSALHPGQSA AIYLAGEHIG 660
  661 FIGVVHPELE RKLDLNGRTV VFEVQWNKLA DRAVPQAREI SRFPANRRDI AVVVAENVPA 720
  721 EDILAECKKV GANQVVGVNL FDVYSGKGVA EGYKSLAISL VLQDTARTLE EEEIAATVAK 780
  781 CVEALKQRFQ ASLRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..795] PSI-BLAST 1000.0 Domains B1 and B5 of PheRS-beta, PheT; Domain B2 of PheRS-beta, PheT; Phenylalanyl-tRNA synthetase; Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain; B3/B4 domain of PheRS, PheT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phenylalanine-tRNA ligase activity
    		•  13.8919118344182 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  8.21379103874748 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  8.21379103874748 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  8.20292704456024 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.90150581291897 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.61548498770105 bayes_pls_golite062009
  • ligase activity
    		•  2.56279938346489 bayes_pls_golite062009
  • structural molecule activity
    		•  2.54582212334303 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.40504745115911 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.07594942154162 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.72324031407565 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.72215103383322 bayes_pls_golite062009
  • binding
    		•  1.60192408330567 bayes_pls_golite062009
  • DNA binding
    		•  1.60160949474354 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.921774798819338 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.506819168662173 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.440010017405756 bayes_pls_golite062009
  • nuclease activity
    		•  0.29926900436997 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.19668406318255 bayes_pls_golite062009
  • RNA binding
    		•  0.17671444859699 bayes_pls_golite062009
  • protein binding
    		•  0.175576548546361 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle