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Protein Overview: gi|36784361, gi|...

General Information:
Name(s) found: gi|37524935 [NCBI NR]
gi|36784361 [NCBI NR]
Description(s) found:
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  • gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp. laumondii TTO1] [NCBI NR]
  • gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp. laumondii TTO1] [NCBI NR]
  • DNA polymerase III epsilon chain [Photorhabdus luminescens subsp. laumondii TTO1]gi|37524935|ref|NP_928279.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp. laumondii TTO1] [nrdb_11152004_Chlamydomonas]
  • DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp. laumondii TTO1] [nr-271106-contam.fasta]
  • DNA polymerase III epsilon chain [Photorhabdus luminescens subsp. laumondii TTO1] [nr-271106-contam.fasta]
    • Organism: Photorhabdus luminescens subsp. laumondii TTO1
    Length: 248 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAITRQVV LDTETTGMNK LGVHYEGHKI IEIGAVEVIN RRLTGRHFHV YIQPDRLVDP  60
   61 EAFEVHGISD EFLQDKPLFA DIADEFIEFI RGAELIIHNA PFDIGFIDYE FGKLNRDIPP 120
  121 TADFCKITDS LQLARGLFPG KRNNLDALCD RYDIDNSKRT LHGALLDAEI LSDVYLIMTG 180
  181 GQTSLAFSME GEIASGANVS EIQRITRPQM ALKVIYATDE ELAAHESRLD LVEKKGGSCL 240
  241 WRMNLGQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..248] PSI-BLAST 47.69897 N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA polymerase activity
    		•  7.87431862983329 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  7.78411937387917 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  5.3880945520411 bayes_pls_golite062009
  • exonuclease activity
    		•  2.86892175148145 bayes_pls_golite062009
  • nuclease activity
    		•  2.84202779131927 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.94077739152313 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.87431870698721 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.87430802282815 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.75713164321634 bayes_pls_golite062009
  • transferase activity
    		•  1.47288345517763 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.41871623152578 bayes_pls_golite062009
  • catalytic activity
    		•  1.25233849524628 bayes_pls_golite062009
  • endonuclease activity
    		•  0.935348031740788 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.782108781904855 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  0.77421125364834 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.64268174969672 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.48776342704945 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.26279899872348 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.251640316483416 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.18445559832317 bayes_pls_golite062009
  • single-stranded DNA specific 3'-5' exodeoxyribonuclease activity
    		•  0.1355017328177 bayes_pls_golite062009
  • binding
    		•  0.122249780594036 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle