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Protein Overview: scaf6-PC

General Information:
Name(s) found: scaf6-PC / FBpp0290769 [FlyBase]
Description(s) found:
Found 13 descriptions.
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  • The gene scaf6 is referred to in FlyBase by the symbol Dmel\scaf6 (CG33522, FBgn0053522). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:17029966..17035659. It has the cytological map location 73E5. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: nuclear mRNA splicing, via spliceosome. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 182 amino acids

    Gene Ontology:
    Cellular Component: spliceosomal complex [ISS][NAS]
    Biological Process: nuclear mRNA splicing, via spliceosome [ISS][NAS]
    Molecular Function: mRNA binding [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVQPPRDAS LRNIIDKLAE FVARNGPEFE AITKQKQQNN PKFEFLYGGE FANYYQFRVA  60
   61 AEQALLKQQA INQQLPPGAP SGHYMQHPPP MQQSQPPGLY PPPNQQPPHP PETAQDNMQQ 120
  121 QTQHSWPPNS GNGGPPNNQQ ANGNPMAMNL TSQLEAIKMQ QKSLREQIQQ SEANLSAQHT 180
  181 VI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] PSI-BLAST 18.0 No description for 2e60A was found.
    2 View Details [70..182] FFAS03 1.01 Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle