YRC Public Data Repository - Protein Structure Prediction

Protein:	scaf6-PC
Organism:	Drosophila melanogaster
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scaf6-PC.

Description	E-value	Query Range	Subject Range
scaf6-PB - The gene scaf6 is referred to in FlyBase by the symbol Dmel\scaf6 (CG33522, FBgn0053522). It is a pr...	199.0	[0..1]	[182..1]
gi\|55238764, gi\|... - gi\|57917623\|ref\|XP_556627.1\| ENSANGP00000025453 [Anopheles gambiae str. PEST], gi\|55238764\|gb\|EAL399...	166.0	[0..8]	[179..1]
gi\|187032078, gi... - gi\|39582029\|emb\|CAE64460.1\| Hypothetical protein CBG09176 [Caenorhabditis briggsae], gi\|187032078\|em... gi\|157776275 - gi\|157776275\|ref\|XP_001666203.1\| hypothetical protein CBG09176 [Caenorhabditis briggsae AF16]	163.0	[0..1]	[174..356]
SUGP1_RAT - SURP and G-patch domain-containing protein 1 OS=Rattus norvegicus GN=Sugp1 PE=1 SV=1	156.0	[0..2]	[173..251]
gi\|45946836 - gi\|45946836\|gb\|AAH27188.2\| Sf4 protein [Mus musculus]	152.0	[0..2]	[173..253]
gi\|11358301, gi\|... - gi\|8979714\|emb\|CAB96835.1\| putative protein [Arabidopsis thaliana], pir\|\|T50789 hypothetical protein...	149.0	[0..1]	[166..307]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVQPPRDAS LRNIIDKLAE FVARNGPEFE AITKQKQQNN PKFEFLYGGE FANYYQFRVA  60
   61 AEQALLKQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	2e60A
Description:	No description for 2e60A was found.

Predicted Domain #2

Region A:
Residues: [70-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AINQQLPPGA PSGHYMQHPP PMQQSQPPGL YPPPNQQPPH PPETAQDNMQ QQTQHSWPPN  60
   61 SGNGGPPNNQ QANGNPMAMN LTSQLEAIKM QQKSLREQIQ QSEANLSAQH TVI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	1pk8A
Description:	Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits