YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: GME_ARATH

General Information:
Name(s) found: GME_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|73919692|sp|Q93VR3.1|GME_ARATH RecName: Full=GDP-mannose 3,5-epimerase; Short=GDP-Man 3,5-epimerase [NCBI NR]
  • gi|21436019|gb|AAM51587.1| AT5g28840/F7P1_20 [Arabidopsis thaliana] [NCBI NR]
  • gi|16323180|gb|AAL15324.1| AT5g28840/F7P1_20 [Arabidopsis thaliana] [NCBI NR]
  • gi|16323113|gb|AAL15291.1| AT5g28840/F7P1_20 [Arabidopsis thaliana] [NCBI NR]
  • gi|15241945|ref|NP_198236.1| GME (GDP-D-MANNOSE 3',5'-EPIMERASE); GDP-mannose 3,5-epimerase/ NAD or NADH binding / catalytic [Arabidopsis thaliana] [NCBI NR]
  • gi|110740559|dbj|BAE98385.1| GDP-mannose 3',5'-epimerase [Arabidopsis thaliana] [NCBI NR]
  • GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1 [Swiss-Prot]
  • (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man 3,5-epimerase) [Swiss-Prot]
  • AT5g28840/F7P1_20 [Arabidopsis thaliana]gi|16323180|gb|AAL15324.1| AT5g28840/F7P1_20 [Arabidopsis thaliana]gi|16323113|gb|AAL15291.1| AT5g28840/F7P1_20 [Arabidopsis thaliana]gi|15241945|ref|NP_198236.1| NAD-dependent epimerase/dehydratase family protei [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 GDP-mannose 3,5-epimerase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: GME | GME (GDP-D-MANNOSE 3',5'-EPIMERASE); GDP-mannose 3,5-epimerase/ NAD binding / catalytic | chr5:10862476-10864028 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g28840/F7P1_20 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GDP-mannose 3,5-epimerase/ catalytic [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GDP-mannose 3',5'-epimerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GDP-mannose 3,5-epimerase (GDP-Man 3,5-epimerase) [nr-271106-contam.fasta]
  • | Symbols: GME | GDP-D-mannose 3',5'-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 377 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: nucleotide-sugar metabolic process [ISS]
    L-ascorbic acid biosynthetic process [TAS]
    Molecular Function: GDP-mannose 3,5-epimerase activity [IDA][ISS]
    catalytic activity [ISS]
    NAD or NADH binding [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTNGTDYG AYTYKELERE QYWPSENLKI SITGAGGFIA SHIARRLKHE GHYVIASDWK  60
   61 KNEHMTEDMF CDEFHLVDLR VMENCLKVTE GVDHVFNLAA DMGGMGFIQS NHSVIMYNNT 120
  121 MISFNMIEAA RINGIKRFFY ASSACIYPEF KQLETTNVSL KESDAWPAEP QDAYGLEKLA 180
  181 TEELCKHYNK DFGIECRIGR FHNIYGPFGT WKGGREKAPA AFCRKAQTST DRFEMWGDGL 240
  241 QTRSFTFIDE CVEGVLRLTK SDFREPVNIG SDEMVSMNEM AEMVLSFEEK KLPIHHIPGP 300
  301 EGVRGRNSDN NLIKEKLGWA PNMRLKEGLR ITYFWIKEQI EKEKAKGSDV SLYGSSKVVG 360
  361 TQAPVQLGSL RAADGKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..377] PSI-BLAST 80.154902 gdp-mannose-3', 5' -epimerase (arabidopsis thaliana), with gdp-alpha-d-mannose and gdp-beta-l-galactose bound in the active site.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • UDP-glucose 4-epimerase activity
    		•  2.3391363629523 bayes_pls_golite062009
  • catalytic activity
    		•  2.16785883389468 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.3919444853018 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.17019598256699 bayes_pls_golite062009
  • dTDP-4-dehydrorhamnose reductase activity
    		•  0.835820446605149 bayes_pls_golite062009
  • fatty acid synthase activity
    		•  0.561621495862231 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle