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Protein Overview: gi|21435107

General Information:
Name(s) found: gi|21435107 [NCBI NR]
Description(s) found:
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  • gi|21435107|gb|AAM51172.1| collagenase-3 [Rattus norvegicus] [NCBI NR]
  • collagenase-3 [Rattus norvegicus] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Collagenase-3 (Fragment) [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 Collagenase-3 [EBI-IPI_rat_3.13_12-01-2005_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Mmp13 Collagenase-3 (Fragment) [rat-ipi-250309-contam.fasta]
  • Collagenase-3 (Fragment) OS=Rattus norvegicus GN=Mmp13 [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 7 amino acids

    Gene Ontology:
    Cellular Component: intercellular canaliculus [IDA]
    extracellular space [IDA]
    fibrillar collagen [IDA]
    Golgi apparatus [IDA]
    extracellular region [IEA]
    proteinaceous extracellular matrix [IEA]
    lysosome [IDA]
    Biological Process: response to hypoxia [IEP]
    peptide catabolic process [IDA]
    response to estrogen stimulus [IEP]
    bone mineralization [UNKNOWN][IEA]
    ossification [IEP]
    proteolysis [IDA]
    metabolic process [IEA]
    collagen catabolic process [UNKNOWN][IEA]
    receptor internalization [IGI]
    embryonic hindlimb morphogenesis [IEP]
    response to mechanical stimulus [IEP]
    cartilage development [UNKNOWN][IEA]
    Molecular Function: zinc ion binding [IDA]
    low-density lipoprotein receptor binding [IPI]
    calcium ion binding [IDA]
    fibronectin binding [IPI]
    calcium-dependent protein binding [IDA]
    peptidase activity [UNKNOWN][IEA]
    metalloendopeptidase activity [UNKNOWN][IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FAEHYLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle