Protein Overview: SYQ_ARATH

General Information:
Name(s) found:	SYQ_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|22329783\|ref\|NP_173906.2\| OVA9 (ovule abortion 9); glutamine-tRNA ligase [Arabidopsis thaliana] [NCBI NR] gi\|21387137\|gb\|AAM47972.1\| unknown protein [Arabidopsis thaliana] [NCBI NR] gi\|17065036\|gb\|AAL32672.1\| Unknown protein [Arabidopsis thaliana] [NCBI NR] Glutamine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=OVA9 PE=2 SV=1 [Swiss-Prot] unknown protein [Arabidopsis thaliana]gi\|17065036\|gb\|AAL32672.1\| Unknown protein [Arabidopsis thaliana]gi\|22329783\|ref\|NP_173906.2\| glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Glutamine-tRNA ligase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: OVA9 \| OVA9 (OVULE ABORTION 9); glutamine-tRNA ligase \| chr1:8889267-8894192 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] Unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta] unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta] ATP binding / glutamate-tRNA ligase/ glutamine-tRNA ligase/ tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: OVA9 \| glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative \| chr1:8889280-8894205 REVERSE LENGTH=795 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta] Putative tRNA-glutamine synthetase OS=Arabidopsis thaliana GN=F4F7.3 PE=2 SV=1 [ARATH-contam.fasta]
Organism:	Arabidopsis thaliana
Length:	795 amino acids
Gene Ontology:
Cellular Component:	cytosol [ISS]
Biological Process:	glutamyl-tRNA aminoacylation [ISS] ovule development [IMP] translation [TAS]
Molecular Function:	glutamine-tRNA ligase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKDDNSEK SIELFISIGL DEKTARNTIN NNKVTANLTA VIHEAAVTDG CDRNTGNLLY  60
   61 SVATKFPTNA LVHRPTLLKY IVNSKIKTPA QLEAAFAFFA STGPEDFKLN EFEEACGVGI 120
  121 EVSPEDIEKA VKGIFEENKK TILEQRYRTN VGELFGHVRK SLPWADPKIV KKLIDEKMYE 180
  181 LLGEKTAADN EKPTKKKEKK EKPAKVEEKK AVVETTAEPS EEELNPYTIF PQPEQNFMVH 240
  241 TEVFFSDGSI LRCSNTKEVL DKHLKVTGGK VYTRFPPEPN GYLHIGHAKA MFVDFGLAKE 300
  301 RGGCCYLRYD DTNPEAEKEE YINHIEEIVK WMGWEPFKIT YTSDYFQELY DLAVELIRRG 360
  361 HAYVDHQTAD EIKEYREKKM NSPWRDRPIE ESLKLFDEMR RGIIEEGKAT LRMKQDMQSD 420
  421 NFNMYDLIAY RIKFAPHPKA GDKWCIYPSY DYAHCTVDSL ENITHSLCTL EFETRRASYY 480
  481 WLLHSLSLYM PYVWEYSRLN VTNTVMSKRK LNYIVTNKYV DGWDDPRLLT LSGLRRRGVT 540
  541 STAINAFVRG IGITRSDGSM IHVSRLEHHI REELNKTAPR TMVVLNPLKV VITNLESDKL 600
  601 IELDAKRWPD AQNDDPSAFY KVPFSRVVYI DQSDFRMKDS KDYYGLAPGK SVLLRYAFPI 660
  661 KCTNVVFADD NETVREIHAE YDPEKKSKPK GVLHWVAESS PGEEPIKVEV RLFEKLFNSE 720
  721 NPAELNDAWL TDINPNSKMV ISGAYAVSTL KDAAVGDRFQ FERLGYYAVD KDSEPGKLVF 780
  781 NRTVTLRDSY GKGGK

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
glutamine-tRNA ligase activity	7.66556935228325	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	7.16276509815667	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	7.16276509815667	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.13957775963187	bayes_pls_golite062009
ligase activity	6.11211476973434	bayes_pls_golite062009
lysine-tRNA ligase activity	4.64665624411373	bayes_pls_golite062009
structural constituent of ribosome	4.61484562096458	bayes_pls_golite062009
structural molecule activity	4.261982318682	bayes_pls_golite062009
glutamate-tRNA ligase activity	2.63681738794687	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
5S rRNA binding	2.25646775578129	bayes_pls_golite062009
rRNA binding	2.12571610259264	bayes_pls_golite062009
methionine-tRNA ligase activity	2.01261843164558	bayes_pls_golite062009
tyrosine-tRNA ligase activity	1.88984817882585	bayes_pls_golite062009
tryptophan-tRNA ligase activity	1.14187887833901	bayes_pls_golite062009
arginine-tRNA ligase activity	1.13743634264647	bayes_pls_golite062009
nucleotidyltransferase activity	1.06535308346284	bayes_pls_golite062009
cysteine-tRNA ligase activity	0.844943947059557	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.625793556381714	bayes_pls_golite062009
binding	0.47302762432927	bayes_pls_golite062009
nucleic acid binding	0.161799496958314	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..151]	Pfam	63.481486	No description for PF04558.6 was found. No confident structure predictions are available.
2	View Details	[152..252]	PSI-BLAST	8.69897	Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
3	View Details	[253..795]	PSI-BLAST	165.0	Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain; Glutaminyl-tRNA synthetase (GlnRS)

Protein Overview: SYQ_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: