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Protein Overview: RQL1_ARATH

General Information:
Name(s) found: RQL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30679600|ref|NP_187225.2| RECQI1 (Arabidopsis RecQ helicase l1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • gi|10944747|emb|CAC14163.1| DNA Helicase [Arabidopsis thaliana] [NCBI NR]
  • ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana GN=RECQL1 PE=2 SV=1 [Swiss-Prot]
  • DNA Helicase [Arabidopsis thaliana]gi|30679600|ref|NP_187225.2| DNA helicase (RECQI1) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: RECQI1 | RECQI1 (Arabidopsis RecQ helicase l1); ATP-dependent helicase | chr3:1698186-1701234 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA Helicase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-1701228 FORWARD LENGTH=606 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 606 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: DNA recombination [IEA]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA  60
   61 DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT DDDDDDSRVE VHVIEDSPEP 120
  121 KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH 180
  181 ETPSYEELQA LDDLEFANLV IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL 240
  241 PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC 300
  301 KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN 360
  361 FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI NLKYEVIVKT KEPLKQLQEL 420
  421 LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR 480
  481 IVCATIAFGM GIDKADVRFV IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV 540
  541 VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC 600
  601 DNCERS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] PSI-BLAST 3.154902 No description for 2gjkA was found.
    2 View Details [192..606] PSI-BLAST 77.39794 Structure of the RecQ Catalytic Core

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity
    		•  1.3968461902559 bayes_pls_golite062009
  • binding
    		•  1.30574971150356 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.21914470055902 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.20866473034586 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.20806660978014 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.1940578085009 bayes_pls_golite062009
  • ATPase activity
    		•  0.759296991895 bayes_pls_golite062009
  • nucleotide binding
    		•  0.35924591059837 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle