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Protein Overview: AGD4_ARATH

General Information:
Name(s) found: AGD4_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • ADP-ribosylation factor GTPase-activating protein AGD4 OS=Arabidopsis thaliana GN=AGD4 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 775 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: regulation of ARF GTPase activity [IEA]
    Molecular Function: zinc ion binding [IEA]
    ARF GTPase activator activity [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE  60
   61 EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV EHVLLERLMN FISVDLQEAK 120
  121 ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI 180
  181 EAKKKYEFLE SISAIMDAHL RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR 240
  241 RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS 300
  301 SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL 360
  361 TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT LQAENGADRM DWVNKITKAI 420
  421 GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN 480
  481 ACAECNAPEP DWASLNLGVL LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL 540
  541 GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE 600
  601 SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK 660
  661 KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE LLLQFGADLN IRDYHGRTPL 720
  721 HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..425] PSI-BLAST 62.045757 No description for 2elbA was found.
    2 View Details [426..775] PSI-BLAST 55.69897 Ankyrin-R

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytoskeletal protein binding
    		•  3.03613378654125 bayes_pls_golite062009
  • actin binding
    		•  3.00914116198279 bayes_pls_golite062009
  • binding
    		•  2.50303824442522 bayes_pls_golite062009
  • GTPase binding
    		•  2.4109827282693 bayes_pls_golite062009
  • small GTPase binding
    		•  2.35000142917744 bayes_pls_golite062009
  • protein binding
    		•  2.1446140694885 bayes_pls_golite062009
  • actin filament binding
    		•  1.90278181549871 bayes_pls_golite062009
  • SH3 domain binding
    		•  1.01300075742025 bayes_pls_golite062009
  • profilin binding
    		•  0.71636159822267 bayes_pls_golite062009
  • phospholipid binding
    		•  0.289747621686826 bayes_pls_golite062009
  • transporter activity
    		•  0.0356867444078989 bayes_pls_golite062009
  • phosphoinositide binding
    		•  0.00504532763036469 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.00375566629887814 bayes_pls_golite062009
    2
    Term Confidence Notes
  • cytoskeletal protein binding
    		•  2.85681263546298 bayes_pls_golite062009
  • binding
    		•  1.82139512362868 bayes_pls_golite062009
  • protein binding
    		•  1.6716587413544 bayes_pls_golite062009
  • actin binding
    		•  1.39613805702117 bayes_pls_golite062009
  • actin filament binding
    		•  0.779030113223383 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle