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Protein Overview: gi|27754320, gi|...

General Information:
Name(s) found: gi|28393881 [NCBI NR]
gi|27754320 [NCBI NR]
gi|22329119 [NCBI NR]
Description(s) found:
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  • gi|28393881|gb|AAO42348.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|27754320|gb|AAO22613.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|22329119|ref|NP_195070.2| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • putative polygalacturonase [Arabidopsis thaliana]gi|27754320|gb|AAO22613.1| putative polygalacturonase [Arabidopsis thaliana]gi|22329119|ref|NP_195070.2| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis t [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr4:16092023-16094735 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr4:16092020-16094732 FORWARD LENGTH=475 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glycoside hydrolase family 28 protein / polygalacturonase (Pectinase) family protein OS=Arabidopsis thaliana GN=At4g33440 PE=2 SV=1 [ARATH-contam.fasta]
  • Pectin lyase-like superfamily protein OS=Arabidopsis thaliana GN=At4g33440 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 475 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF  60
   61 FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG FAAEGGAQLN VPEGTWLSGS 120
  121 FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI 180
  181 TGENGTIDGQ GKMWWELWWN RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS 240
  241 NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS 300
  301 SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI 360
  361 TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY ISNVVSLNSR KAPMLLGVEG 420
  421 TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..475] PSI-BLAST 58.045757 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle