YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27754320, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF  60
   61 FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG FAAEGGAQLN VPEGTWLSGS 120
  121 FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI 180
  181 TGENGTIDGQ GKMWWELWWN RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS 240
  241 NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS 300
  301 SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI 360
  361 TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY ISNVVSLNSR KAPMLLGVEG 420
  421 TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Type	Start	End	Confidence
Cytoplasmic	1	17	0.62
Transmembrane Helix	18	36	0.64
Non-Cytoplasmic	37	475	0.98