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Protein Overview: lig-PD

General Information:
Name(s) found: lig-PD / FBpp0100030 [FlyBase]
Description(s) found:
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  • gi|74861699|sp|Q86S05.1|LIG_DROME RecName: Full=Protein lingerer [NCBI NR]
  • gi|62471671|ref|NP_001014503.1| lingerer, isoform D [Drosophila melanogaster] [NCBI NR]
  • gi|61678426|gb|AAX52724.1| lingerer, isoform D [Drosophila melanogaster] [NCBI NR]
  • gi|27764455|gb|AAO23023.1|AF276964_1 lingerer protein type2 [Drosophila melanogaster] [NCBI NR]
  • Protein lingerer OS=Drosophila melanogaster GN=lig PE=1 SV=1 [Swiss-Prot]
  • The gene lingerer is referred to in FlyBase by the symbol Dmel\lig (CG8715, FBgn0020279). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:3955460..3966320. It has the cytological map location 44A4. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: copulation. 18 alleles are reported. The phenotype of these alleles is annotated with: dorsal mesothoracic disc. It has 7 annotated transcripts and 7 annotated polypeptides. [FlyBase]
  • lingerer protein type2 [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(3957404..3957784,3957840..3958017,3958326..3959743,3959868..3960283,3960632..3960739,3960872..3960976,3961105..3961205,3961479..3962005,3962978..3963112,3963170..3963295,3963365..3963613,3963798..3964181); ID=FBpp0100030; name=li [fly-100309-contam.fasta]
  • lingerer CG8715-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG8715-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(3957404..3957784,3957840..3958017,3958326..3959743,3959868..3960283,3960632..3960739,3960872..3960976,3961105..3961205,3961479..3962005,3962978..3963112,3963170..3963295,3963365..3963613,3963798..3964181); ID=FBpp0100030; name=lig-PD; parent=FBgn0020279,FBtr0100575; dbxref=FlyBase_Annotation_IDs:CG8715-PD,FlyBase:FBpp0100030,GB_protein:AAX52724.1,REFSEQ:NP_001014503,GB_protein:AAX52724; MD5=0fce3df59dd92e204607d17769f1aa6b; length=1375; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(3957404..3957784,3957840..3958017,3958326..3959743,3959868..3960283,3960632..3960739,3960872..3960976,3961105..3961205,3961479..3962005,3962978..3963112,3963170..3963295,3963365..3963613,3963798..3964181); ID=FBpp0100030; name=lig-PD; parent=FBgn0020279,FBtr0100575; dbxref=FlyBase_Annotation_IDs:CG8715-PD,FlyBase:FBpp0100030,GB_protein:AAX52724.1,REFSEQ:NP_001014503,GB_protein:AAX52724; MD5=0fce3df59dd92e204607d17769f1aa6b; length=1375; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(3957404..3957784,3957840..3958017,3958326..3959743,3959868..3960283,3960632..3960739,3960872..3960976,3961105..3961205,3961479..3962005,3962978..3963112,3963170..3963295,3963365..3963613,3963798..3964181); ID=FBpp0100030; name=lig-PD; parent=FBgn0020279,FBtr0100575; dbxref=FlyBase_Annotation_IDs:CG8715-PD,FlyBase:FBpp0100030,GB_protein:AAX52724.1,REFSEQ:NP_001014503,GB_protein:AAX52724,FlyMine:FBpp0100030,modMine:FBpp0100030; MD5=0fce3df59dd92e204607d17769f1aa6b; length=1375; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(8069899..8070279,8070335..8070512,8070821..8072238,8072363..8072778,8073127..8073234,8073367..8073471,8073600..8073700,8073974..8074500,8075473..8075607,8075665..8075790,8075860..8076108,8076293..8076676); ID=FBpp0100030; name=lig-PD; parent=FBgn0020279,FBtr0100575; dbxref=FlyBase_Annotation_IDs:CG8715-PD,FlyBase:FBpp0100030,GB_protein:AAX52724.1,REFSEQ:NP_001014503,GB_protein:AAX52724,FlyMine:FBpp0100030,modMine:FBpp0100030; MD5=0fce3df59dd92e204607d17769f1aa6b; length=1375; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(8069899..8070279,8070335..8070512,8070821..8072238,8072363..8072778,8073127..8073234,8073367..8073471,8073600..8073700,8073974..8074500,8075473..8075607,8075665..8075790,8075860..8076108,8076293..8076676); ID=FBpp0100030; name=lig-PD; parent=FBgn0020279,FBtr0100575; dbxref=FlyBase_Annotation_IDs:CG8715-PD,FlyBase:FBpp0100030,GB_protein:AAX52724.1,REFSEQ:NP_001014503,GB_protein:AAX52724,FlyMine:FBpp0100030,modMine:FBpp0100030; MD5=0fce3df59dd92e204607d17769f1aa6b; length=1375; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0100030 type=protein; loc=2R:join(8069899..8070279,8070335..8070512,8070821..8072238,8072363..8072778,8073127..8073234,8073367..8073471,8073600..8073700,8073974..8074500,8075473..8075607,8075665..8075790,8075860..8076108,8076293..8076676); ID=FBpp0100030; name=lig-PD; parent=FBgn0020279,FBtr0100575; dbxref=FlyBase_Annotation_IDs:CG8715-PD,FlyBase:FBpp0100030,GB_protein:AAX52724.1,REFSEQ:NP_001014503,GB_protein:AAX52724,FlyMine:FBpp0100030,modMine:FBpp0100030; MD5=0fce3df59dd92e204607d17769f1aa6b; length=1375; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(8069899..8070279,8070335..8070512,8070821..8072238,8072363..8072778,8073127..8073234,8073367..8073471,8073600..8073700,8073974..8074500,8075473..8075607,8075665..8075790,8075860..8076108,8076293..8076676); ID=FBpp0100030; name=lig-PD; parent=FBgn0020279,FBtr0100575; dbxref=FlyBase_Annotation_IDs:CG8715-PD,FlyBase:FBpp0100030,GB_protein:AAX52724.1,REFSEQ:NP_001014503,GB_protein:AAX52724,UniProt/Swiss-Prot:Q86S05,FlyMine:FBpp0100030,modMine:FBpp0100030; MD5=0fce3df59dd92e204607d17769f1aa6b; length=1375; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1375 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA][NAS]
    Biological Process: copulation [IMP][NAS][TAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQTRSGGG GGGGHARNQK KSNASNSGGG GTGHHDGVSH AAAAGKKGGQ DASKTDKPEK  60
   61 AQPKATTEQL RIAQITNSTT EDPQINEKVL LLLTMTQRSE EEVCCALNEC DYDLEAAANF 120
  121 LIEELPQGAF AKYEKKRKNK AANNTADGAA GDGDWADGNG NADRREKSRN RSSNRGGTRG 180
  181 SSDSRGWRGR ETRENERNQR ESREPWSGQN AGQDRGDDRA NDNYRGQRNG GGRSGPGGGG 240
  241 RGGGFVSRSG RGGGRMGGRT GGPRGDRGSG GPGGAYGSGR GGNANEDHHE VELWDNTIAQ 300
  301 NAEKQQQAHD DAWGDWNNEE YEGSLKDSKV FTTSNLATQS AANVVSGTGA SVTAVPAAAG 360
  361 TEISAPPGLE HQLVQQGSHL EESSSSGPAA VTPPATLSGS ATTPLLQYSA AVSNPPPQLQ 420
  421 SQGTQSGAGT GASAAAGGGA GSTPSSFVSA SPDTFSSAAS AAATLVHQAQ KQQQLQQQTT 480
  481 PIKPSATLSV EQSQYFNSLA SQGVSPGSVP VQSAPAGYAQ NPVAAYSQTS TSVGVSQYPN 540
  541 TYANVFASGT AAGAGTAEQS QQQPQIRRAR VKLPPPSKIP ASAVEMPGDN ALNNIGYLDV 600
  601 QFGALDFGTD DGFEPLPEKV GSGFSIDGQQ QQQQPDDYQS KSQQQQQVTL AAGLQSSQIS 660
  661 DALNAAGYTS RSTSQQQQGV SSAVNATIDQ LTKSDPYGQT GGSGNAYQNA YQSSGASKTA 720
  721 SGFPTTAPGG YSSSTYANVQ SSVANSYQQQ GYGSYQPSSY QQQAGSGAQS GTGAVSGGGG 780
  781 TATQNIPVGG SSSQNSTSGN ASSAYLTSGY STPQSAYQSS QSVYGNTGLS NSSGFSGSAS 840
  841 NASSQYANFS ASAKLKDATT ASSAAHYDSV STSSGVSSNS GSTGNGGVVS GQTGANQAAV 900
  901 SNNNSVSGSS SVSNVTAGVA SGNVAGVGGG VSQSGVSSGV GVPGGSASSV GVNVNNNSSS 960
  961 ASSVGAATVA QTATGTTAAV LASLTNKNTS SSNSSGSGGS AATTTGNASG QGAGASTGGV1020
 1021 GSSSGAGGAG SGGGSGSGLV PTNIQMVSQY IQTGLPYYQQ PVYSYEELQM MQQRVPHVQG1080
 1081 YYDLNYPPAS LGAGRDNLGS VTYSAMNDGR FARTDNNSSP VGNVSSTMSQ QAGSSAPMLN1140
 1141 VPYAYFYGGN VMPGSFQYGT PAIYPQIPAA NTASGQQFPK PSYSAGYGST SYDTLSQTTQ1200
 1201 DYSKGGYSSS VNQQSKTQTV SNQSQAGTGS DLTSSMYGKG HVALNKVNSY EKQSFHSGTP1260
 1261 PPFNMPNTQT AGGTSAQPYG MYLPMPAAGH HNMIHQPIHQ VHSELPLQVV VGGGTESHVL1320
 1321 IHGNVNGPQV TYHRIWQTEP VQCQNQLVAA HCNNFEPNID CCVHDNNNDL SFFAD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] PSI-BLAST 16.39794 Solution structure of RSGI RUH-015, a UBA domain from mouse cDNA
    2 View Details [136..370] FFAS03 2.24 Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
    3 View Details [371..541] deduced N/A No confident structure predictions are available.
    4 View Details [542..750] deduced N/A No confident structure predictions are available.
    5 View Details [751..978] deduced N/A No confident structure predictions are available.
    6 View Details [979..1108] deduced N/A No confident structure predictions are available.
    7 View Details [1109..1222] deduced N/A No confident structure predictions are available.
    8 View Details [1223..1375] MSA 3.141991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle