| Protein: | lig-PD |
| Organism: | Drosophila melanogaster |
| Length: | 1375 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lig-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
385.0 | [0..1] | [1370..201] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MSTQTRSGGG GGGGHARNQK KSNASNSGGG GTGHHDGVSH AAAAGKKGGQ DASKTDKPEK 60
61 AQPKATTEQL RIAQITNSTT EDPQINEKVL LLLTMTQRSE EEVCCALNEC DYDLEAAANF 120
121 LIEELPQGAF AKYEK
|
| Detection Method: |  |
| Confidence: | 16.39794 |
| Match: | 1wj7A |
| Description: | Solution structure of RSGI RUH-015, a UBA domain from mouse cDNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [136-370] |
1 11 21 31 41 51
| | | | | |
1 KRKNKAANNT ADGAAGDGDW ADGNGNADRR EKSRNRSSNR GGTRGSSDSR GWRGRETREN 60
61 ERNQRESREP WSGQNAGQDR GDDRANDNYR GQRNGGGRSG PGGGGRGGGF VSRSGRGGGR 120
121 MGGRTGGPRG DRGSGGPGGA YGSGRGGNAN EDHHEVELWD NTIAQNAEKQ QQAHDDAWGD 180
181 WNNEEYEGSL KDSKVFTTSN LATQSAANVV SGTGASVTAV PAAAGTEISA PPGLE
|
| Detection Method: | |
| Confidence: | 2.24 |
| Match: | 1wckA |
| Description: | Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [371-541] |
1 11 21 31 41 51
| | | | | |
1 HQLVQQGSHL EESSSSGPAA VTPPATLSGS ATTPLLQYSA AVSNPPPQLQ SQGTQSGAGT 60
61 GASAAAGGGA GSTPSSFVSA SPDTFSSAAS AAATLVHQAQ KQQQLQQQTT PIKPSATLSV 120
121 EQSQYFNSLA SQGVSPGSVP VQSAPAGYAQ NPVAAYSQTS TSVGVSQYPN T
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [542-750] |
1 11 21 31 41 51
| | | | | |
1 YANVFASGTA AGAGTAEQSQ QQPQIRRARV KLPPPSKIPA SAVEMPGDNA LNNIGYLDVQ 60
61 FGALDFGTDD GFEPLPEKVG SGFSIDGQQQ QQQPDDYQSK SQQQQQVTLA AGLQSSQISD 120
121 ALNAAGYTSR STSQQQQGVS SAVNATIDQL TKSDPYGQTG GSGNAYQNAY QSSGASKTAS 180
181 GFPTTAPGGY SSSTYANVQS SVANSYQQQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [751-978] |
1 11 21 31 41 51
| | | | | |
1 GYGSYQPSSY QQQAGSGAQS GTGAVSGGGG TATQNIPVGG SSSQNSTSGN ASSAYLTSGY 60
61 STPQSAYQSS QSVYGNTGLS NSSGFSGSAS NASSQYANFS ASAKLKDATT ASSAAHYDSV 120
121 STSSGVSSNS GSTGNGGVVS GQTGANQAAV SNNNSVSGSS SVSNVTAGVA SGNVAGVGGG 180
181 VSQSGVSSGV GVPGGSASSV GVNVNNNSSS ASSVGAATVA QTATGTTA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [979-1108] |
1 11 21 31 41 51
| | | | | |
1 AVLASLTNKN TSSSNSSGSG GSAATTTGNA SGQGAGASTG GVGSSSGAGG AGSGGGSGSG 60
61 LVPTNIQMVS QYIQTGLPYY QQPVYSYEEL QMMQQRVPHV QGYYDLNYPP ASLGAGRDNL 120
121 GSVTYSAMND
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1109-1222] |
1 11 21 31 41 51
| | | | | |
1 GRFARTDNNS SPVGNVSSTM SQQAGSSAPM LNVPYAYFYG GNVMPGSFQY GTPAIYPQIP 60
61 AANTASGQQF PKPSYSAGYG STSYDTLSQT TQDYSKGGYS SSVNQQSKTQ TVSN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1223-1375] |
1 11 21 31 41 51
| | | | | |
1 QSQAGTGSDL TSSMYGKGHV ALNKVNSYEK QSFHSGTPPP FNMPNTQTAG GTSAQPYGMY 60
61 LPMPAAGHHN MIHQPIHQVH SELPLQVVVG GGTESHVLIH GNVNGPQVTY HRIWQTEPVQ 120
121 CQNQLVAAHC NNFEPNIDCC VHDNNNDLSF FAD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
