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Protein Overview: ps-PJ

General Information:
Name(s) found: ps-PJ / FBpp0110330 [FlyBase]
Description(s) found:
Found 19 descriptions.
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  • The gene pasilla is referred to in FlyBase by the symbol Dmel\ps (CG42670, FBgn0261552). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:5243664..5275190. It has the cytological map location 85D16-85D17. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: nuclear mRNA splicing, via spliceosome. 27 alleles are reported. The phenotypes of these alleles are annotated with: embryonic salivary gland; amnioserosa; germ band. It has 14 annotated transcripts and 14 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 539 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [IEP]
    Molecular Function: mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLCSSESV CSGIEVEIEN NNNNHIHHGE TTYHMKILVP AVASGAIIGK GGETIASLQK  60
   61 DTGARVKMSK SHDFYPGTTE RVCLITGSTE AIMVVMEFIM DKIREKPDLT NKIVDTDSKQ 120
  121 TQERDKQVKI LVPNSTAGMI IGKGGAFIKQ IKEESGSYVQ ISQKPTDVSL QERCITIIGD 180
  181 KENNKNACKM ILSKIVEDPQ SGTCLNVSYA DVSGPVANFN PTGSPYATNQ NAINSSTASL 240
  241 NSTLGTTIGG ANSAASLLVN GTGINLSINL GSPNPAPNLA VATQLLEHIK VAMRGSGYSE 300
  301 TVTNEVVAAL SVLAKYGVLG MGVGVSHTNG AHSTLGNFLG VTTLDQQTAA AASAATASNV 360
  361 FGAVGQVNLE QYAAAVASAA AASRPTQSQL DAAAVQFDPF RHLGSATAPA ATPVSLNNNS 420
  421 FGLTATTGTA TTAQLGGLSK SPTPGDLSSK DSKNVEVPEV IIGAILGPSG RSLVEIQHVS 480
  481 GANVQISKKG IFAPGTRNRI VTITGQPSAI AKAQYLIEQK INEEETKRAR QIPLTTVVN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] PSI-BLAST 34.39794 No description for 2annA was found.
    2 View Details [215..413] deduced N/A No confident structure predictions are available.
    3 View Details [414..539] PSI-BLAST 17.69897 Neuro-oncological ventral antigen 2, nova-2, KH3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  5.18414740305744 bayes_pls_golite062009
  • mRNA binding
    		•  3.82977088614136 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.68444148122352 bayes_pls_golite062009
  • binding
    		•  2.8667878224392 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.43703138180882 bayes_pls_golite062009
  • DNA binding
    		•  1.20852534725468 bayes_pls_golite062009
    		• 1.02980840568405 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.63404501189528 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.489176583045793 bayes_pls_golite062009
  • protein binding
    		•  0.468975312217329 bayes_pls_golite062009
  • transcription factor activity
    		•  0.386248501195543 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle