| Protein: | ps-PJ |
| Organism: | Drosophila melanogaster |
| Length: | 539 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ps-PJ.
| Description | E-value | Query Range |
Subject Range |
|
|
312.0 | [0..30] | [539..96] |
|
Region A: Residues: [1-214] |
1 11 21 31 41 51
| | | | | |
1 MRKLCSSESV CSGIEVEIEN NNNNHIHHGE TTYHMKILVP AVASGAIIGK GGETIASLQK 60
61 DTGARVKMSK SHDFYPGTTE RVCLITGSTE AIMVVMEFIM DKIREKPDLT NKIVDTDSKQ 120
121 TQERDKQVKI LVPNSTAGMI IGKGGAFIKQ IKEESGSYVQ ISQKPTDVSL QERCITIIGD 180
181 KENNKNACKM ILSKIVEDPQ SGTCLNVSYA DVSG
|
| Detection Method: |  |
| Confidence: | 34.39794 |
| Match: | 2annA |
| Description: | No description for 2annA was found. |
|
Region A: Residues: [215-413] |
1 11 21 31 41 51
| | | | | |
1 PVANFNPTGS PYATNQNAIN SSTASLNSTL GTTIGGANSA ASLLVNGTGI NLSINLGSPN 60
61 PAPNLAVATQ LLEHIKVAMR GSGYSETVTN EVVAALSVLA KYGVLGMGVG VSHTNGAHST 120
121 LGNFLGVTTL DQQTAAAASA ATASNVFGAV GQVNLEQYAA AVASAAAASR PTQSQLDAAA 180
181 VQFDPFRHLG SATAPAATP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [414-539] |
1 11 21 31 41 51
| | | | | |
1 VSLNNNSFGL TATTGTATTA QLGGLSKSPT PGDLSSKDSK NVEVPEVIIG AILGPSGRSL 60
61 VEIQHVSGAN VQISKKGIFA PGTRNRIVTI TGQPSAIAKA QYLIEQKINE EETKRARQIP 120
121 LTTVVN
|
| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 1ec6A |
| Description: | Neuro-oncological ventral antigen 2, nova-2, KH3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.18414740305744 | bayes_pls_golite062009 |
| mRNA binding | 3.82977088614136 | bayes_pls_golite062009 |
| nucleic acid binding | 3.68444148122352 | bayes_pls_golite062009 |
| binding | 2.8667878224392 | bayes_pls_golite062009 |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| 1.02980840568405 | bayes_pls_golite062009 | |
| poly-pyrimidine tract binding | 0.63404501189528 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| protein binding | 0.468975312217329 | bayes_pls_golite062009 |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
