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Protein Overview: GATB_ARATH

General Information:
Name(s) found: GATB_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|18402234|ref|NP_564530.1| GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|18377821|gb|AAL67097.1| At1g48520/T1N15_12 [Arabidopsis thaliana] [NCBI NR]
  • gi|15809911|gb|AAL06883.1| At1g48520/T1N15_12 [Arabidopsis thaliana] [NCBI NR]
  • gi|11078540|gb|AAG29096.1|AF239836_1 Glu-tRNA(Gln) amidotransferase subunit B [Arabidopsis thaliana] [NCBI NR]
  • gi|110742579|dbj|BAE99203.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GATB PE=2 SV=1 [Swiss-Prot]
  • At1g48520/T1N15_12 [Arabidopsis thaliana]gi|15809911|gb|AAL06883.1| At1g48520/T1N15_12 [Arabidopsis thaliana]gi|11078540|gb|AAG29096.1| Glu-tRNA(Gln) amidotransferase subunit B [Arabidopsis thaliana]gi|18402234|ref|NP_564530.1| glutamyl-tRNA(Gln) amido [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glutamyl-tRNA(Gln) amidotransferase B family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: GATB | GATB (GLU-ADT SUBUNIT B); glutaminyl-tRNA synthase (glutamine-hydrolyzing) | chr1:17943853-17946208 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Glu-tRNA(Gln) amidotransferase subunit B [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g48520/T1N15_12 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutamyl-tRNA(Gln) amidotransferase/ ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: GATB | GLU-ADT subunit B | chr1:17940185-17942540 FORWARD LENGTH=550 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 550 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    Biological Process: glutamyl-tRNA aminoacylation [ISS]
    translation [IEA]
    Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor [IEA]
    ligase activity [IEA]
    glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTLLRTIQ LNQFSLLGTS LLRRRRSNNF SVRSCGSQTT TTHEAKQSSP TRVAPKNHKS  60
   61 NQLDEILRDY EAVIGIETHV QLSTLTKAFC SCSNNYGSYP NTSICPVCMG LPGALPVLNS 120
  121 KVVEFGVRLG LALNCDLSLK SKFDRKQYFY PDLPKGYQIS QFDIPIASGG YVDVDIPLEF 180
  181 GGGHRRFGIT RVHMEEDAGK LLHSDTGDYS QVDLNRAGVP LLEIVSEPDM RSGIEAAEYA 240
  241 CEMQRIARYL GVSNGNMQEG SLRCDVNISI RPIGQAEFGT KVEIKNLNAF SAISRAIDFE 300
  301 ISRQALLYNQ GKADQIVTET RLWEEGAQKT VTMRKKEGLA DYRYFPEPDL PEVILTQEYV 360
  361 DSIRASLPEL PEAKRRRYEA MGLGMQDVLF LANDVSVAEY FDAVIGKGAE VKLAANWIMS 420
  421 DIAAYLKNEK LSINDIKLTP QELAELIAAI KDGTISGKIG KEILFELLAK GGTVKGMIKA 480
  481 KDLVQITDPA EIEKMVIQVV SENPKQLEQY RSGKTKLQGY FAGQVMKMSK GKANPGLLNK 540
  541 ILLEKLNAKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..550] PSI-BLAST 1000.0 No description for 2df4B was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
    		•  6.94703732461209 bayes_pls_golite062009
  • ligase activity
    		•  5.28014676041088 bayes_pls_golite062009
  • catalytic activity
    		•  1.08973967683802 bayes_pls_golite062009
  • binding
    		•  1.0468360119595 bayes_pls_golite062009
  • ammonia ligase activity
    		•  0.978763138251862 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.789800177023595 bayes_pls_golite062009
  • acid-ammonia (or amide) ligase activity
    		•  0.632807059205458 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.545649763280687 bayes_pls_golite062009
  • protein binding
    		•  0.440356087696859 bayes_pls_golite062009
  • kinase activity
    		•  0.21984983699175 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.132389278472779 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle